Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05375 and SGL_RS05380 overlap by 4 nucleotides SGL_RS05380 and SGL_RS05385 overlap by 8 nucleotides SGL_RS05385 and SGL_RS05390 overlap by 4 nucleotides SGL_RS05390 and SGL_RS05395 are separated by 247 nucleotides
SGL_RS05375: SGL_RS05375 - hypothetical protein, at 751,381 to 751,674
_RS05375
SGL_RS05380: SGL_RS05380 - monovalent cation/H(+) antiporter subunit G, at 751,671 to 751,967
_RS05380
SGL_RS05385: SGL_RS05385 - DUF4040 domain-containing protein, at 751,960 to 752,535
_RS05385
SGL_RS05390: SGL_RS05390 - Na(+)/H(+) antiporter subunit B, at 752,532 to 753,179
_RS05390
SGL_RS05395: SGL_RS05395 - DUF58 domain-containing protein, at 753,427 to 754,734
_RS05395
Position (kb) 752
753
754 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 751.566 kb on - strand, within SGL_RS05375 at 751.811 kb on + strand, within SGL_RS05380 at 751.818 kb on - strand, within SGL_RS05380 at 751.931 kb on - strand, within SGL_RS05380 at 751.942 kb on - strand at 752.097 kb on + strand, within SGL_RS05385 at 752.105 kb on - strand, within SGL_RS05385 at 752.105 kb on - strand, within SGL_RS05385 at 752.109 kb on + strand, within SGL_RS05385 at 752.109 kb on + strand, within SGL_RS05385 at 752.109 kb on + strand, within SGL_RS05385 at 752.117 kb on - strand, within SGL_RS05385 at 752.125 kb on - strand, within SGL_RS05385 at 752.135 kb on - strand, within SGL_RS05385 at 752.197 kb on - strand, within SGL_RS05385 at 752.282 kb on - strand, within SGL_RS05385 at 752.284 kb on - strand, within SGL_RS05385 at 752.371 kb on + strand, within SGL_RS05385 at 752.378 kb on - strand, within SGL_RS05385 at 752.506 kb on + strand at 752.506 kb on + strand at 752.506 kb on + strand at 752.627 kb on + strand, within SGL_RS05390 at 752.633 kb on + strand, within SGL_RS05390 at 752.814 kb on + strand, within SGL_RS05390 at 752.827 kb on - strand, within SGL_RS05390 at 752.897 kb on - strand, within SGL_RS05390 at 752.973 kb on - strand, within SGL_RS05390 at 753.095 kb on + strand, within SGL_RS05390 at 753.188 kb on + strand at 753.193 kb on + strand at 753.201 kb on - strand at 753.251 kb on - strand at 753.331 kb on - strand at 753.431 kb on - strand at 753.431 kb on - strand at 753.455 kb on + strand at 753.743 kb on - strand, within SGL_RS05395 at 753.743 kb on - strand, within SGL_RS05395 at 753.745 kb on + strand, within SGL_RS05395 at 753.794 kb on - strand, within SGL_RS05395 at 753.822 kb on - strand, within SGL_RS05395 at 753.875 kb on + strand, within SGL_RS05395 at 753.883 kb on - strand, within SGL_RS05395 at 753.965 kb on + strand, within SGL_RS05395 at 753.965 kb on + strand, within SGL_RS05395 at 753.973 kb on - strand, within SGL_RS05395
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 751,566 - SGL_RS05375 0.63 -0.2 751,811 + SGL_RS05380 0.47 -1.4 751,818 - SGL_RS05380 0.49 -0.9 751,931 - SGL_RS05380 0.88 -2.8 751,942 - -0.2 752,097 + SGL_RS05385 0.24 -0.9 752,105 - SGL_RS05385 0.25 -2.3 752,105 - SGL_RS05385 0.25 -3.0 752,109 + SGL_RS05385 0.26 +0.4 752,109 + SGL_RS05385 0.26 -0.9 752,109 + SGL_RS05385 0.26 -1.6 752,117 - SGL_RS05385 0.27 -2.8 752,125 - SGL_RS05385 0.29 -2.0 752,135 - SGL_RS05385 0.30 -1.6 752,197 - SGL_RS05385 0.41 -1.8 752,282 - SGL_RS05385 0.56 -2.5 752,284 - SGL_RS05385 0.56 -0.6 752,371 + SGL_RS05385 0.71 -2.6 752,378 - SGL_RS05385 0.73 -0.9 752,506 + -2.0 752,506 + -2.7 752,506 + -2.4 752,627 + SGL_RS05390 0.15 -2.0 752,633 + SGL_RS05390 0.16 -1.6 752,814 + SGL_RS05390 0.44 -1.6 752,827 - SGL_RS05390 0.46 -3.1 752,897 - SGL_RS05390 0.56 -2.8 752,973 - SGL_RS05390 0.68 -1.4 753,095 + SGL_RS05390 0.87 -2.6 753,188 + +0.0 753,193 + -0.1 753,201 - +0.8 753,251 - +0.0 753,331 - -0.7 753,431 - -0.3 753,431 - -0.1 753,455 + +0.5 753,743 - SGL_RS05395 0.24 +0.3 753,743 - SGL_RS05395 0.24 -0.3 753,745 + SGL_RS05395 0.24 -0.3 753,794 - SGL_RS05395 0.28 -0.7 753,822 - SGL_RS05395 0.30 +0.2 753,875 + SGL_RS05395 0.34 -0.1 753,883 - SGL_RS05395 0.35 +0.3 753,965 + SGL_RS05395 0.41 -0.2 753,965 + SGL_RS05395 0.41 +0.4 753,973 - SGL_RS05395 0.42 +0.4
Or see this region's nucleotide sequence