Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04525 and SGL_RS04530 are separated by 85 nucleotides SGL_RS04530 and SGL_RS04535 are separated by 36 nucleotides SGL_RS04535 and SGL_RS04540 are separated by 9 nucleotides SGL_RS04540 and SGL_RS04545 are separated by 32 nucleotides SGL_RS04545 and SGL_RS04550 are separated by 84 nucleotides SGL_RS04550 and SGL_RS19785 are separated by 161 nucleotides SGL_RS19785 and SGL_RS04560 are separated by 587 nucleotides
SGL_RS04525: SGL_RS04525 - photosynthesis system II assembly factor Ycf48, at 569,544 to 570,572
_RS04525
SGL_RS04530: SGL_RS04530 - cytochrome b559 subunit alpha, at 570,658 to 570,903
_RS04530
SGL_RS04535: SGL_RS04535 - cytochrome b559 subunit beta, at 570,940 to 571,074
_RS04535
SGL_RS04540: SGL_RS04540 - photosystem II reaction center protein L, at 571,084 to 571,203
_RS04540
SGL_RS04545: SGL_RS04545 - photosystem II reaction center protein J, at 571,236 to 571,355
_RS04545
SGL_RS04550: SGL_RS04550 - glutamate 5-kinase, at 571,440 to 572,567
_RS04550
SGL_RS19785: SGL_RS19785 - IS701 family transposase, at 572,729 to 572,906
_RS19785
SGL_RS04560: SGL_RS04560 - IS4-like element IS4Sa family transposase, at 573,494 to 574,510
_RS04560
Position (kb) 571
572
573 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 571.281 kb on - strand, within SGL_RS04545 at 571.520 kb on - strand at 571.570 kb on + strand, within SGL_RS04550 at 571.808 kb on - strand, within SGL_RS04550 at 571.829 kb on - strand, within SGL_RS04550 at 571.829 kb on - strand, within SGL_RS04550 at 571.924 kb on + strand, within SGL_RS04550 at 571.998 kb on + strand, within SGL_RS04550 at 572.338 kb on - strand, within SGL_RS04550 at 572.388 kb on - strand, within SGL_RS04550 at 572.429 kb on - strand, within SGL_RS04550 at 572.502 kb on + strand at 572.502 kb on + strand at 572.736 kb on - strand at 573.018 kb on - strand at 573.065 kb on + strand at 573.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 571,281 - SGL_RS04545 0.38 +0.5 571,520 - -0.9 571,570 + SGL_RS04550 0.12 -3.5 571,808 - SGL_RS04550 0.33 -2.5 571,829 - SGL_RS04550 0.34 -0.6 571,829 - SGL_RS04550 0.34 -3.7 571,924 + SGL_RS04550 0.43 -1.7 571,998 + SGL_RS04550 0.49 -2.8 572,338 - SGL_RS04550 0.80 -3.9 572,388 - SGL_RS04550 0.84 -2.8 572,429 - SGL_RS04550 0.88 -2.7 572,502 + -2.9 572,502 + -3.6 572,736 - +0.2 573,018 - +0.1 573,065 + +0.2 573,077 + -0.7
Or see this region's nucleotide sequence