Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04510

Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04505 and SGL_RS04510 are separated by 133 nucleotidesSGL_RS04510 and SGL_RS04515 are separated by 177 nucleotides SGL_RS04505: SGL_RS04505 - phospholipid carrier-dependent glycosyltransferase, at 563,448 to 565,925 _RS04505 SGL_RS04510: SGL_RS04510 - DUF561 domain-containing protein, at 566,059 to 566,805 _RS04510 SGL_RS04515: SGL_RS04515 - 1-deoxy-D-xylulose-5-phosphate synthase, at 566,983 to 568,905 _RS04515 Position (kb) 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1at 565.066 kb on - strand, within SGL_RS04505at 565.066 kb on - strand, within SGL_RS04505at 565.066 kb on - strand, within SGL_RS04505at 565.077 kb on - strand, within SGL_RS04505at 565.180 kb on + strand, within SGL_RS04505at 565.368 kb on - strand, within SGL_RS04505at 565.444 kb on + strand, within SGL_RS04505at 565.454 kb on + strand, within SGL_RS04505at 565.466 kb on + strand, within SGL_RS04505at 565.532 kb on + strand, within SGL_RS04505at 565.578 kb on + strand, within SGL_RS04505at 565.578 kb on + strand, within SGL_RS04505at 565.586 kb on - strand, within SGL_RS04505at 565.606 kb on + strand, within SGL_RS04505at 565.615 kb on + strand, within SGL_RS04505at 565.691 kb on - strandat 565.818 kb on + strandat 565.884 kb on - strandat 565.931 kb on + strandat 566.013 kb on + strandat 566.036 kb on + strandat 566.173 kb on + strand, within SGL_RS04510at 566.253 kb on + strand, within SGL_RS04510at 566.423 kb on - strand, within SGL_RS04510at 566.542 kb on + strand, within SGL_RS04510at 566.704 kb on - strand, within SGL_RS04510at 566.781 kb on + strandat 566.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth
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565,066 - SGL_RS04505 0.65 +0.1
565,066 - SGL_RS04505 0.65 -1.6
565,066 - SGL_RS04505 0.65 -1.4
565,077 - SGL_RS04505 0.66 -0.2
565,180 + SGL_RS04505 0.70 -0.5
565,368 - SGL_RS04505 0.77 +0.0
565,444 + SGL_RS04505 0.81 -1.1
565,454 + SGL_RS04505 0.81 -0.3
565,466 + SGL_RS04505 0.81 +0.6
565,532 + SGL_RS04505 0.84 -0.3
565,578 + SGL_RS04505 0.86 -0.6
565,578 + SGL_RS04505 0.86 -0.9
565,586 - SGL_RS04505 0.86 -0.6
565,606 + SGL_RS04505 0.87 -0.9
565,615 + SGL_RS04505 0.87 +0.3
565,691 - -1.3
565,818 + -0.1
565,884 - +1.3
565,931 + -0.3
566,013 + +0.0
566,036 + -0.0
566,173 + SGL_RS04510 0.15 -1.4
566,253 + SGL_RS04510 0.26 -3.3
566,423 - SGL_RS04510 0.49 -2.8
566,542 + SGL_RS04510 0.65 -3.1
566,704 - SGL_RS04510 0.86 -3.5
566,781 + +0.4
566,909 + -0.8

Or see this region's nucleotide sequence