Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02785 and SGL_RS02790 are separated by 75 nucleotides SGL_RS02790 and SGL_RS02795 are separated by 67 nucleotides SGL_RS02795 and SGL_RS19405 are separated by 118 nucleotides SGL_RS19405 and SGL_RS02800 are separated by 46 nucleotides SGL_RS02800 and SGL_RS02805 are separated by 80 nucleotides
SGL_RS02785: SGL_RS02785 - CRR6 family NdhI maturation factor, at 194,310 to 194,801
_RS02785
SGL_RS02790: SGL_RS02790 - HEAT repeat domain-containing protein, at 194,877 to 195,617
_RS02790
SGL_RS02795: SGL_RS02795 - flavin prenyltransferase UbiX, at 195,685 to 196,305
_RS02795
SGL_RS19405: SGL_RS19405 - hypothetical protein, at 196,424 to 196,564
_RS19405
SGL_RS02800: SGL_RS02800 - hypothetical protein, at 196,611 to 196,991
_RS02800
SGL_RS02805: SGL_RS02805 - universal stress protein, at 197,072 to 197,557
_RS02805
Position (kb) 195
196
197 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 194.735 kb on - strand, within SGL_RS02785 at 194.757 kb on + strand at 194.817 kb on + strand at 194.830 kb on - strand at 194.830 kb on - strand at 195.096 kb on + strand, within SGL_RS02790 at 195.215 kb on - strand, within SGL_RS02790 at 195.220 kb on - strand, within SGL_RS02790 at 195.255 kb on + strand, within SGL_RS02790 at 195.923 kb on + strand, within SGL_RS02795 at 195.937 kb on - strand, within SGL_RS02795 at 195.992 kb on - strand, within SGL_RS02795 at 195.997 kb on - strand, within SGL_RS02795 at 196.230 kb on + strand, within SGL_RS02795 at 196.238 kb on - strand, within SGL_RS02795 at 196.334 kb on - strand at 196.357 kb on - strand at 196.448 kb on + strand, within SGL_RS19405 at 196.456 kb on - strand, within SGL_RS19405 at 196.607 kb on - strand at 196.763 kb on - strand, within SGL_RS02800 at 196.851 kb on + strand, within SGL_RS02800 at 196.882 kb on - strand, within SGL_RS02800 at 196.973 kb on + strand at 196.981 kb on - strand at 197.152 kb on + strand, within SGL_RS02805 at 197.152 kb on + strand, within SGL_RS02805 at 197.153 kb on + strand, within SGL_RS02805 at 197.155 kb on + strand, within SGL_RS02805 at 197.160 kb on - strand, within SGL_RS02805 at 197.276 kb on - strand, within SGL_RS02805
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 194,735 - SGL_RS02785 0.86 -4.8 194,757 + -1.9 194,817 + -0.0 194,830 - +0.3 194,830 - +0.1 195,096 + SGL_RS02790 0.30 +0.2 195,215 - SGL_RS02790 0.46 -0.3 195,220 - SGL_RS02790 0.46 -1.3 195,255 + SGL_RS02790 0.51 -1.3 195,923 + SGL_RS02795 0.38 -4.9 195,937 - SGL_RS02795 0.41 -3.2 195,992 - SGL_RS02795 0.49 -0.8 195,997 - SGL_RS02795 0.50 -2.9 196,230 + SGL_RS02795 0.88 -4.2 196,238 - SGL_RS02795 0.89 -5.0 196,334 - -0.9 196,357 - -0.2 196,448 + SGL_RS19405 0.17 -0.5 196,456 - SGL_RS19405 0.23 -0.1 196,607 - +0.3 196,763 - SGL_RS02800 0.40 -0.0 196,851 + SGL_RS02800 0.63 -0.5 196,882 - SGL_RS02800 0.71 -1.2 196,973 + +0.2 196,981 - -1.1 197,152 + SGL_RS02805 0.16 -0.0 197,152 + SGL_RS02805 0.16 +1.5 197,153 + SGL_RS02805 0.17 +0.4 197,155 + SGL_RS02805 0.17 +0.1 197,160 - SGL_RS02805 0.18 -0.1 197,276 - SGL_RS02805 0.42 +0.2
Or see this region's nucleotide sequence