Experiment: growth in full media and 10 mM glucose= photoheterotrophic growth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02095 and SGL_RS02100 are separated by 5 nucleotides SGL_RS02100 and SGL_RS02105 are separated by 115 nucleotides SGL_RS02105 and SGL_RS02110 are separated by 223 nucleotides SGL_RS02110 and SGL_RS02115 are separated by 98 nucleotides
SGL_RS02095: SGL_RS02095 - dTDP-4-dehydrorhamnose reductase, at 55,669 to 56,550
_RS02095
SGL_RS02100: SGL_RS02100 - peptide-methionine (S)-S-oxide reductase MsrA, at 56,556 to 57,224
_RS02100
SGL_RS02105: SGL_RS02105 - glycogen synthase GlgA, at 57,340 to 58,815
_RS02105
SGL_RS02110: SGL_RS02110 - TetR/AcrR family transcriptional regulator, at 59,039 to 59,650
_RS02110
SGL_RS02115: SGL_RS02115 - GNAT family N-acetyltransferase, at 59,749 to 60,423
_RS02115
Position (kb) 57
58
59 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 56.353 kb on + strand, within SGL_RS02095 at 56.353 kb on + strand, within SGL_RS02095 at 56.356 kb on - strand, within SGL_RS02095 at 56.447 kb on - strand, within SGL_RS02095 at 56.753 kb on + strand, within SGL_RS02100 at 56.813 kb on - strand, within SGL_RS02100 at 56.848 kb on + strand, within SGL_RS02100 at 56.848 kb on + strand, within SGL_RS02100 at 56.851 kb on - strand, within SGL_RS02100 at 56.857 kb on - strand, within SGL_RS02100 at 57.022 kb on - strand, within SGL_RS02100 at 57.177 kb on - strand at 57.257 kb on + strand at 57.299 kb on + strand at 57.332 kb on - strand at 57.345 kb on - strand at 57.352 kb on - strand at 57.408 kb on - strand at 57.457 kb on - strand at 57.457 kb on - strand at 57.614 kb on + strand, within SGL_RS02105 at 57.659 kb on - strand, within SGL_RS02105 at 57.703 kb on + strand, within SGL_RS02105 at 57.737 kb on + strand, within SGL_RS02105 at 57.737 kb on + strand, within SGL_RS02105 at 57.745 kb on - strand, within SGL_RS02105 at 57.897 kb on + strand, within SGL_RS02105 at 58.030 kb on + strand, within SGL_RS02105 at 58.040 kb on + strand, within SGL_RS02105 at 58.198 kb on + strand, within SGL_RS02105 at 58.308 kb on - strand, within SGL_RS02105 at 58.343 kb on - strand, within SGL_RS02105 at 58.353 kb on - strand, within SGL_RS02105 at 58.416 kb on + strand, within SGL_RS02105 at 58.500 kb on - strand, within SGL_RS02105 at 58.618 kb on - strand, within SGL_RS02105 at 58.619 kb on - strand, within SGL_RS02105 at 58.626 kb on + strand, within SGL_RS02105 at 58.634 kb on - strand, within SGL_RS02105 at 58.634 kb on - strand, within SGL_RS02105 at 58.932 kb on - strand at 58.932 kb on - strand at 59.074 kb on + strand at 59.091 kb on + strand at 59.100 kb on - strand at 59.119 kb on + strand, within SGL_RS02110 at 59.226 kb on - strand, within SGL_RS02110 at 59.316 kb on + strand, within SGL_RS02110 at 59.360 kb on + strand, within SGL_RS02110 at 59.443 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.457 kb on + strand, within SGL_RS02110 at 59.573 kb on + strand, within SGL_RS02110 at 59.594 kb on + strand at 59.605 kb on + strand at 59.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media and 10 mM glucose= photoheterotrophic growth remove 56,353 + SGL_RS02095 0.78 -3.1 56,353 + SGL_RS02095 0.78 -4.6 56,356 - SGL_RS02095 0.78 -1.3 56,447 - SGL_RS02095 0.88 -2.6 56,753 + SGL_RS02100 0.29 +0.5 56,813 - SGL_RS02100 0.38 +0.4 56,848 + SGL_RS02100 0.44 +0.0 56,848 + SGL_RS02100 0.44 +0.1 56,851 - SGL_RS02100 0.44 +0.2 56,857 - SGL_RS02100 0.45 +0.7 57,022 - SGL_RS02100 0.70 -0.0 57,177 - +0.3 57,257 + +0.9 57,299 + +0.7 57,332 - +0.2 57,345 - +0.6 57,352 - -0.3 57,408 - -3.9 57,457 - -5.2 57,457 - -5.7 57,614 + SGL_RS02105 0.19 -4.7 57,659 - SGL_RS02105 0.22 -5.2 57,703 + SGL_RS02105 0.25 -5.2 57,737 + SGL_RS02105 0.27 -4.1 57,737 + SGL_RS02105 0.27 -6.5 57,745 - SGL_RS02105 0.27 -6.1 57,897 + SGL_RS02105 0.38 -1.1 58,030 + SGL_RS02105 0.47 -4.3 58,040 + SGL_RS02105 0.47 -4.0 58,198 + SGL_RS02105 0.58 -3.8 58,308 - SGL_RS02105 0.66 -3.9 58,343 - SGL_RS02105 0.68 -4.8 58,353 - SGL_RS02105 0.69 -2.1 58,416 + SGL_RS02105 0.73 -4.8 58,500 - SGL_RS02105 0.79 -2.4 58,618 - SGL_RS02105 0.87 -2.7 58,619 - SGL_RS02105 0.87 -2.7 58,626 + SGL_RS02105 0.87 -4.9 58,634 - SGL_RS02105 0.88 -3.9 58,634 - SGL_RS02105 0.88 -5.9 58,932 - +0.5 58,932 - -0.2 59,074 + +0.1 59,091 + -0.9 59,100 - +0.1 59,119 + SGL_RS02110 0.13 -1.7 59,226 - SGL_RS02110 0.31 +1.2 59,316 + SGL_RS02110 0.45 -0.5 59,360 + SGL_RS02110 0.52 -0.6 59,443 - SGL_RS02110 0.66 +0.0 59,453 - SGL_RS02110 0.68 +1.0 59,453 - SGL_RS02110 0.68 -0.8 59,453 - SGL_RS02110 0.68 +0.4 59,453 - SGL_RS02110 0.68 +0.7 59,457 + SGL_RS02110 0.68 +0.1 59,573 + SGL_RS02110 0.87 -0.3 59,594 + +0.1 59,605 + +0.4 59,815 - +0.6
Or see this region's nucleotide sequence