Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18620

Experiment: Arg 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01795 and SGL_RS01800 overlap by 8 nucleotidesSGL_RS01800 and SGL_RS18620 are separated by 239 nucleotidesSGL_RS18620 and SGL_RS19530 are separated by 12 nucleotides SGL_RS01795: SGL_RS01795 - hypothetical protein, at 87,011 to 87,265 _RS01795 SGL_RS01800: SGL_RS01800 - ParA family protein, at 87,258 to 87,854 _RS01800 SGL_RS18620: SGL_RS18620 - HNH endonuclease, at 88,094 to 88,417 _RS18620 SGL_RS19530: SGL_RS19530 - class I SAM-dependent DNA methyltransferase, at 88,430 to 89,968 _RS19530 Position (kb) 88 89Strain fitness (log2 ratio) -1 0 1 2at 87.204 kb on - strand, within SGL_RS01795at 87.311 kb on - strandat 87.337 kb on - strand, within SGL_RS01800at 87.338 kb on + strand, within SGL_RS01800at 87.348 kb on - strand, within SGL_RS01800at 87.366 kb on - strand, within SGL_RS01800at 87.407 kb on + strand, within SGL_RS01800at 87.448 kb on + strand, within SGL_RS01800at 87.562 kb on - strand, within SGL_RS01800at 87.637 kb on - strand, within SGL_RS01800at 87.665 kb on + strand, within SGL_RS01800at 87.718 kb on + strand, within SGL_RS01800at 87.726 kb on - strand, within SGL_RS01800at 87.726 kb on - strand, within SGL_RS01800at 87.736 kb on - strand, within SGL_RS01800at 87.738 kb on + strand, within SGL_RS01800at 87.738 kb on + strand, within SGL_RS01800at 87.794 kb on + strand, within SGL_RS01800at 87.802 kb on - strandat 87.802 kb on - strandat 87.973 kb on - strandat 88.017 kb on + strandat 88.105 kb on + strandat 88.189 kb on - strand, within SGL_RS18620at 88.202 kb on - strand, within SGL_RS18620at 88.301 kb on + strand, within SGL_RS18620at 88.301 kb on + strand, within SGL_RS18620at 88.301 kb on + strand, within SGL_RS18620at 88.390 kb on + strandat 88.452 kb on + strandat 88.520 kb on + strandat 88.552 kb on + strandat 88.554 kb on + strandat 88.712 kb on + strand, within SGL_RS19530at 88.754 kb on + strand, within SGL_RS19530at 88.754 kb on + strand, within SGL_RS19530at 88.925 kb on + strand, within SGL_RS19530at 89.028 kb on + strand, within SGL_RS19530at 89.103 kb on - strand, within SGL_RS19530at 89.110 kb on - strand, within SGL_RS19530at 89.110 kb on - strand, within SGL_RS19530at 89.152 kb on + strand, within SGL_RS19530at 89.157 kb on - strand, within SGL_RS19530at 89.172 kb on - strand, within SGL_RS19530at 89.202 kb on + strand, within SGL_RS19530at 89.202 kb on + strand, within SGL_RS19530at 89.210 kb on - strand, within SGL_RS19530at 89.239 kb on + strand, within SGL_RS19530at 89.251 kb on + strand, within SGL_RS19530at 89.267 kb on + strand, within SGL_RS19530at 89.374 kb on - strand, within SGL_RS19530

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Per-strain Table

Position Strand Gene LocusTag Fraction Arg 10 mM as N source, buffered with 20 mM TES pH8
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87,204 - SGL_RS01795 0.76 +0.6
87,311 - +0.6
87,337 - SGL_RS01800 0.13 +0.1
87,338 + SGL_RS01800 0.13 +0.2
87,348 - SGL_RS01800 0.15 +1.6
87,366 - SGL_RS01800 0.18 +0.9
87,407 + SGL_RS01800 0.25 +0.5
87,448 + SGL_RS01800 0.32 -0.1
87,562 - SGL_RS01800 0.51 +1.2
87,637 - SGL_RS01800 0.63 +1.4
87,665 + SGL_RS01800 0.68 -0.2
87,718 + SGL_RS01800 0.77 +0.3
87,726 - SGL_RS01800 0.78 +0.5
87,726 - SGL_RS01800 0.78 +0.4
87,736 - SGL_RS01800 0.80 +1.4
87,738 + SGL_RS01800 0.80 -0.0
87,738 + SGL_RS01800 0.80 +0.3
87,794 + SGL_RS01800 0.90 +0.0
87,802 - +0.7
87,802 - +0.8
87,973 - +0.2
88,017 + +0.1
88,105 + +1.6
88,189 - SGL_RS18620 0.29 +1.3
88,202 - SGL_RS18620 0.33 +1.5
88,301 + SGL_RS18620 0.64 +1.8
88,301 + SGL_RS18620 0.64 +1.9
88,301 + SGL_RS18620 0.64 +1.7
88,390 + +1.3
88,452 + -0.3
88,520 + +0.7
88,552 + -0.6
88,554 + +0.3
88,712 + SGL_RS19530 0.18 -0.0
88,754 + SGL_RS19530 0.21 +1.8
88,754 + SGL_RS19530 0.21 +1.2
88,925 + SGL_RS19530 0.32 -0.2
89,028 + SGL_RS19530 0.39 -0.5
89,103 - SGL_RS19530 0.44 +0.1
89,110 - SGL_RS19530 0.44 +1.7
89,110 - SGL_RS19530 0.44 +0.8
89,152 + SGL_RS19530 0.47 +0.1
89,157 - SGL_RS19530 0.47 +1.2
89,172 - SGL_RS19530 0.48 +1.6
89,202 + SGL_RS19530 0.50 +1.6
89,202 + SGL_RS19530 0.50 -0.3
89,210 - SGL_RS19530 0.51 +1.0
89,239 + SGL_RS19530 0.53 -0.2
89,251 + SGL_RS19530 0.53 +1.2
89,267 + SGL_RS19530 0.54 +0.6
89,374 - SGL_RS19530 0.61 +0.1

Or see this region's nucleotide sequence