Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11815

Experiment: NaNO2 10 mM as N source, buffered with 20 mM TES pH8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11810 and SGL_RS11815 are separated by 201 nucleotidesSGL_RS11815 and SGL_RS11820 overlap by 4 nucleotidesSGL_RS11820 and SGL_RS11825 are separated by 207 nucleotides SGL_RS11810: SGL_RS11810 - urea ABC transporter substrate-binding protein, at 2,098,921 to 2,100,261 _RS11810 SGL_RS11815: SGL_RS11815 - DNA repair protein RadA, at 2,100,463 to 2,101,980 _RS11815 SGL_RS11820: SGL_RS11820 - pentapeptide repeat-containing protein, at 2,101,977 to 2,102,561 _RS11820 SGL_RS11825: SGL_RS11825 - sodium:proton antiporter, at 2,102,769 to 2,104,391 _RS11825 Position (kb) 2100 2101 2102Strain fitness (log2 ratio) -1 0 1at 2099.468 kb on - strand, within SGL_RS11810at 2099.528 kb on + strand, within SGL_RS11810at 2099.537 kb on - strand, within SGL_RS11810at 2099.604 kb on - strand, within SGL_RS11810at 2099.612 kb on + strand, within SGL_RS11810at 2099.649 kb on + strand, within SGL_RS11810at 2099.652 kb on - strand, within SGL_RS11810at 2099.690 kb on + strand, within SGL_RS11810at 2099.850 kb on - strand, within SGL_RS11810at 2099.850 kb on - strand, within SGL_RS11810at 2100.254 kb on - strandat 2100.383 kb on - strandat 2100.435 kb on + strandat 2100.450 kb on - strandat 2100.467 kb on - strandat 2100.530 kb on - strandat 2100.608 kb on + strandat 2100.616 kb on - strand, within SGL_RS11815at 2100.662 kb on - strand, within SGL_RS11815at 2100.754 kb on - strand, within SGL_RS11815at 2100.908 kb on + strand, within SGL_RS11815at 2100.908 kb on + strand, within SGL_RS11815at 2100.960 kb on - strand, within SGL_RS11815at 2101.377 kb on - strand, within SGL_RS11815at 2101.477 kb on + strand, within SGL_RS11815at 2101.579 kb on + strand, within SGL_RS11815at 2101.658 kb on - strand, within SGL_RS11815at 2101.703 kb on + strand, within SGL_RS11815at 2101.900 kb on + strandat 2101.924 kb on + strandat 2101.937 kb on + strandat 2102.180 kb on - strand, within SGL_RS11820at 2102.217 kb on + strand, within SGL_RS11820at 2102.277 kb on + strand, within SGL_RS11820at 2102.373 kb on + strand, within SGL_RS11820at 2102.375 kb on - strand, within SGL_RS11820at 2102.390 kb on + strand, within SGL_RS11820at 2102.398 kb on - strand, within SGL_RS11820at 2102.444 kb on + strand, within SGL_RS11820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NaNO2 10 mM as N source, buffered with 20 mM TES pH8
remove
2,099,468 - SGL_RS11810 0.41 -0.1
2,099,528 + SGL_RS11810 0.45 -0.2
2,099,537 - SGL_RS11810 0.46 +0.5
2,099,604 - SGL_RS11810 0.51 +0.1
2,099,612 + SGL_RS11810 0.52 +0.0
2,099,649 + SGL_RS11810 0.54 -0.3
2,099,652 - SGL_RS11810 0.55 -0.2
2,099,690 + SGL_RS11810 0.57 -0.0
2,099,850 - SGL_RS11810 0.69 +0.2
2,099,850 - SGL_RS11810 0.69 +0.2
2,100,254 - -0.3
2,100,383 - +0.3
2,100,435 + -0.4
2,100,450 - -0.1
2,100,467 - +0.5
2,100,530 - -0.1
2,100,608 + -0.4
2,100,616 - SGL_RS11815 0.10 -0.0
2,100,662 - SGL_RS11815 0.13 -0.5
2,100,754 - SGL_RS11815 0.19 -0.6
2,100,908 + SGL_RS11815 0.29 +0.3
2,100,908 + SGL_RS11815 0.29 -0.7
2,100,960 - SGL_RS11815 0.33 -0.6
2,101,377 - SGL_RS11815 0.60 +0.1
2,101,477 + SGL_RS11815 0.67 -1.3
2,101,579 + SGL_RS11815 0.74 -0.0
2,101,658 - SGL_RS11815 0.79 -0.9
2,101,703 + SGL_RS11815 0.82 -0.4
2,101,900 + -0.7
2,101,924 + -0.6
2,101,937 + -0.4
2,102,180 - SGL_RS11820 0.35 +1.0
2,102,217 + SGL_RS11820 0.41 -0.4
2,102,277 + SGL_RS11820 0.51 +0.3
2,102,373 + SGL_RS11820 0.68 -0.1
2,102,375 - SGL_RS11820 0.68 -0.3
2,102,390 + SGL_RS11820 0.71 +0.0
2,102,398 - SGL_RS11820 0.72 +0.6
2,102,444 + SGL_RS11820 0.80 -0.7

Or see this region's nucleotide sequence