Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17895

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17890 and SGL_RS17895 are separated by 210 nucleotidesSGL_RS17895 and SGL_RS17900 are separated by 23 nucleotidesSGL_RS17900 and SGL_RS17905 are separated by 27 nucleotides SGL_RS17890: SGL_RS17890 - diaminopimelate epimerase, at 3,471,003 to 3,471,842 _RS17890 SGL_RS17895: SGL_RS17895 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 3,472,053 to 3,473,210 _RS17895 SGL_RS17900: SGL_RS17900 - hypothetical protein, at 3,473,234 to 3,473,485 _RS17900 SGL_RS17905: SGL_RS17905 - response regulator transcription factor, at 3,473,513 to 3,474,199 _RS17905 Position (kb) 3472 3473 3474Strain fitness (log2 ratio) -1 0 1at 3471.892 kb on - strandat 3471.963 kb on + strandat 3471.974 kb on + strandat 3472.319 kb on + strand, within SGL_RS17895at 3473.293 kb on - strand, within SGL_RS17900at 3473.306 kb on - strand, within SGL_RS17900at 3473.378 kb on + strand, within SGL_RS17900at 3473.616 kb on - strand, within SGL_RS17905at 3473.846 kb on - strand, within SGL_RS17905at 3473.851 kb on - strand, within SGL_RS17905at 3473.900 kb on - strand, within SGL_RS17905at 3473.965 kb on - strand, within SGL_RS17905at 3474.196 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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3,471,892 - -0.2
3,471,963 + -0.9
3,471,974 + +0.2
3,472,319 + SGL_RS17895 0.23 -0.0
3,473,293 - SGL_RS17900 0.23 +0.5
3,473,306 - SGL_RS17900 0.29 +0.3
3,473,378 + SGL_RS17900 0.57 +0.0
3,473,616 - SGL_RS17905 0.15 +0.4
3,473,846 - SGL_RS17905 0.48 +0.1
3,473,851 - SGL_RS17905 0.49 -0.1
3,473,900 - SGL_RS17905 0.56 -0.4
3,473,965 - SGL_RS17905 0.66 -0.8
3,474,196 - +0.1

Or see this region's nucleotide sequence