Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17055

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17050 and SGL_RS17055 are separated by 71 nucleotidesSGL_RS17055 and SGL_RS17060 are separated by 21 nucleotidesSGL_RS17060 and SGL_RS17065 are separated by 134 nucleotides SGL_RS17050: SGL_RS17050 - UDP-N-acetylmuramate--L-alanine ligase, at 3,279,390 to 3,280,907 _RS17050 SGL_RS17055: SGL_RS17055 - UDP-N-acetylmuramate dehydrogenase, at 3,280,979 to 3,281,932 _RS17055 SGL_RS17060: SGL_RS17060 - hypothetical protein, at 3,281,954 to 3,282,307 _RS17060 SGL_RS17065: SGL_RS17065 - bacterioferritin, at 3,282,442 to 3,282,912 _RS17065 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -2 -1 0 1at 3281.039 kb on + strandat 3281.986 kb on - strandat 3282.023 kb on + strand, within SGL_RS17060at 3282.025 kb on - strand, within SGL_RS17060at 3282.032 kb on + strand, within SGL_RS17060at 3282.037 kb on + strand, within SGL_RS17060at 3282.037 kb on - strand, within SGL_RS17060at 3282.126 kb on - strand, within SGL_RS17060at 3282.330 kb on - strandat 3282.342 kb on - strandat 3282.536 kb on - strand, within SGL_RS17065at 3282.574 kb on + strand, within SGL_RS17065at 3282.616 kb on + strand, within SGL_RS17065at 3282.633 kb on + strand, within SGL_RS17065at 3282.889 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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3,281,039 + -0.9
3,281,986 - -0.0
3,282,023 + SGL_RS17060 0.19 -0.2
3,282,025 - SGL_RS17060 0.20 +0.8
3,282,032 + SGL_RS17060 0.22 -0.3
3,282,037 + SGL_RS17060 0.23 +0.7
3,282,037 - SGL_RS17060 0.23 +0.2
3,282,126 - SGL_RS17060 0.49 +0.3
3,282,330 - +0.5
3,282,342 - -0.5
3,282,536 - SGL_RS17065 0.20 -1.8
3,282,574 + SGL_RS17065 0.28 -0.8
3,282,616 + SGL_RS17065 0.37 -0.6
3,282,633 + SGL_RS17065 0.41 +0.7
3,282,889 - +0.7

Or see this region's nucleotide sequence