Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17005

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17000 and SGL_RS17005 are separated by 254 nucleotidesSGL_RS17005 and SGL_RS17010 are separated by 102 nucleotidesSGL_RS17010 and SGL_RS17015 overlap by 14 nucleotides SGL_RS17000: SGL_RS17000 - NADH-quinone oxidoreductase subunit NuoH, at 3,269,078 to 3,270,196 _RS17000 SGL_RS17005: SGL_RS17005 - quinone-dependent dihydroorotate dehydrogenase, at 3,270,451 to 3,271,596 _RS17005 SGL_RS17010: SGL_RS17010 - SufE family protein, at 3,271,699 to 3,272,178 _RS17010 SGL_RS17015: SGL_RS17015 - FGGY-family carbohydrate kinase, at 3,272,165 to 3,273,442 _RS17015 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -1 0 1at 3270.279 kb on + strandat 3270.298 kb on - strandat 3270.391 kb on + strandat 3270.411 kb on + strandat 3270.664 kb on + strand, within SGL_RS17005at 3270.775 kb on + strand, within SGL_RS17005at 3271.236 kb on + strand, within SGL_RS17005at 3271.720 kb on - strandat 3272.144 kb on + strandat 3272.160 kb on + strandat 3272.463 kb on - strand, within SGL_RS17015

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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3,270,279 + -0.1
3,270,298 - -0.2
3,270,391 + +0.5
3,270,411 + +0.2
3,270,664 + SGL_RS17005 0.19 -0.1
3,270,775 + SGL_RS17005 0.28 -0.6
3,271,236 + SGL_RS17005 0.68 -0.6
3,271,720 - -0.4
3,272,144 + -0.1
3,272,160 + +0.4
3,272,463 - SGL_RS17015 0.23 +0.0

Or see this region's nucleotide sequence