Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15745

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS15740 and SGL_RS15745 are separated by 98 nucleotidesSGL_RS15745 and SGL_RS15750 are separated by 128 nucleotides SGL_RS15740: SGL_RS15740 - M20 family metallopeptidase, at 2,981,009 to 2,982,190 _RS15740 SGL_RS15745: SGL_RS15745 - bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase, at 2,982,289 to 2,983,566 _RS15745 SGL_RS15750: SGL_RS15750 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,983,695 to 2,984,747 _RS15750 Position (kb) 2982 2983 2984Strain fitness (log2 ratio) -1 0 1at 2981.313 kb on - strand, within SGL_RS15740at 2981.326 kb on - strand, within SGL_RS15740at 2981.379 kb on - strand, within SGL_RS15740at 2981.392 kb on + strand, within SGL_RS15740at 2981.424 kb on + strand, within SGL_RS15740at 2981.424 kb on + strand, within SGL_RS15740at 2981.552 kb on - strand, within SGL_RS15740at 2981.555 kb on - strand, within SGL_RS15740at 2981.593 kb on + strand, within SGL_RS15740at 2981.593 kb on + strand, within SGL_RS15740at 2981.606 kb on + strand, within SGL_RS15740at 2981.661 kb on + strand, within SGL_RS15740at 2981.724 kb on - strand, within SGL_RS15740at 2981.752 kb on - strand, within SGL_RS15740at 2981.827 kb on - strand, within SGL_RS15740at 2981.827 kb on - strand, within SGL_RS15740at 2981.847 kb on + strand, within SGL_RS15740at 2981.848 kb on - strand, within SGL_RS15740at 2981.848 kb on - strand, within SGL_RS15740at 2981.850 kb on - strand, within SGL_RS15740at 2981.855 kb on - strand, within SGL_RS15740at 2981.867 kb on + strand, within SGL_RS15740at 2981.888 kb on + strand, within SGL_RS15740at 2981.889 kb on - strand, within SGL_RS15740at 2982.035 kb on + strand, within SGL_RS15740at 2982.060 kb on - strand, within SGL_RS15740at 2982.062 kb on + strand, within SGL_RS15740at 2982.221 kb on + strandat 2982.229 kb on - strandat 2982.229 kb on - strandat 2982.229 kb on - strandat 2982.272 kb on - strandat 2982.291 kb on + strandat 2982.721 kb on - strand, within SGL_RS15745at 2982.790 kb on + strand, within SGL_RS15745at 2983.260 kb on - strand, within SGL_RS15745at 2983.537 kb on + strandat 2983.537 kb on + strandat 2983.764 kb on + strandat 2983.764 kb on + strandat 2983.772 kb on - strandat 2983.772 kb on - strandat 2983.798 kb on - strandat 2983.821 kb on - strand, within SGL_RS15750at 2983.931 kb on - strand, within SGL_RS15750at 2983.959 kb on - strand, within SGL_RS15750at 2983.984 kb on - strand, within SGL_RS15750at 2983.990 kb on - strand, within SGL_RS15750at 2984.062 kb on + strand, within SGL_RS15750at 2984.119 kb on + strand, within SGL_RS15750at 2984.144 kb on - strand, within SGL_RS15750at 2984.198 kb on + strand, within SGL_RS15750at 2984.224 kb on - strand, within SGL_RS15750at 2984.382 kb on - strand, within SGL_RS15750at 2984.410 kb on + strand, within SGL_RS15750at 2984.437 kb on + strand, within SGL_RS15750at 2984.437 kb on + strand, within SGL_RS15750at 2984.445 kb on - strand, within SGL_RS15750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
remove
2,981,313 - SGL_RS15740 0.26 -0.4
2,981,326 - SGL_RS15740 0.27 -0.1
2,981,379 - SGL_RS15740 0.31 -0.3
2,981,392 + SGL_RS15740 0.32 -0.0
2,981,424 + SGL_RS15740 0.35 -0.1
2,981,424 + SGL_RS15740 0.35 +0.7
2,981,552 - SGL_RS15740 0.46 -0.5
2,981,555 - SGL_RS15740 0.46 +0.0
2,981,593 + SGL_RS15740 0.49 +0.3
2,981,593 + SGL_RS15740 0.49 +1.0
2,981,606 + SGL_RS15740 0.51 -0.0
2,981,661 + SGL_RS15740 0.55 +0.3
2,981,724 - SGL_RS15740 0.60 -0.9
2,981,752 - SGL_RS15740 0.63 +0.2
2,981,827 - SGL_RS15740 0.69 -1.1
2,981,827 - SGL_RS15740 0.69 +0.1
2,981,847 + SGL_RS15740 0.71 -0.1
2,981,848 - SGL_RS15740 0.71 +0.2
2,981,848 - SGL_RS15740 0.71 -0.3
2,981,850 - SGL_RS15740 0.71 +0.3
2,981,855 - SGL_RS15740 0.72 -0.3
2,981,867 + SGL_RS15740 0.73 -0.1
2,981,888 + SGL_RS15740 0.74 +0.0
2,981,889 - SGL_RS15740 0.74 +0.3
2,982,035 + SGL_RS15740 0.87 +0.0
2,982,060 - SGL_RS15740 0.89 -0.4
2,982,062 + SGL_RS15740 0.89 -0.0
2,982,221 + -0.2
2,982,229 - -0.1
2,982,229 - +0.1
2,982,229 - +0.3
2,982,272 - -0.2
2,982,291 + -0.1
2,982,721 - SGL_RS15745 0.34 +0.9
2,982,790 + SGL_RS15745 0.39 -0.1
2,983,260 - SGL_RS15745 0.76 -1.7
2,983,537 + -1.1
2,983,537 + +0.9
2,983,764 + -0.3
2,983,764 + +0.2
2,983,772 - +1.1
2,983,772 - -0.9
2,983,798 - +0.3
2,983,821 - SGL_RS15750 0.12 -0.1
2,983,931 - SGL_RS15750 0.22 +0.1
2,983,959 - SGL_RS15750 0.25 +0.0
2,983,984 - SGL_RS15750 0.27 -0.7
2,983,990 - SGL_RS15750 0.28 +0.1
2,984,062 + SGL_RS15750 0.35 +0.6
2,984,119 + SGL_RS15750 0.40 +0.4
2,984,144 - SGL_RS15750 0.43 +0.1
2,984,198 + SGL_RS15750 0.48 +0.0
2,984,224 - SGL_RS15750 0.50 +0.2
2,984,382 - SGL_RS15750 0.65 -0.6
2,984,410 + SGL_RS15750 0.68 -0.4
2,984,437 + SGL_RS15750 0.70 -0.3
2,984,437 + SGL_RS15750 0.70 -0.1
2,984,445 - SGL_RS15750 0.71 +0.3

Or see this region's nucleotide sequence