Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15280

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15275 and SGL_RS15280 overlap by 4 nucleotidesSGL_RS15280 and SGL_RS15285 are separated by 109 nucleotidesSGL_RS15285 and SGL_RS15290 are separated by 216 nucleotides SGL_RS15275: SGL_RS15275 - hypothetical protein, at 2,878,078 to 2,879,289 _RS15275 SGL_RS15280: SGL_RS15280 - HAD family hydrolase, at 2,879,286 to 2,879,855 _RS15280 SGL_RS15285: SGL_RS15285 - D-sedoheptulose 7-phosphate isomerase, at 2,879,965 to 2,880,549 _RS15285 SGL_RS15290: SGL_RS15290 - 6-carboxytetrahydropterin synthase QueD, at 2,880,766 to 2,881,155 _RS15290 Position (kb) 2879 2880Strain fitness (log2 ratio) -1 0 1at 2879.925 kb on + strandat 2880.731 kb on + strandat 2880.746 kb on - strandat 2880.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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2,879,925 + -0.3
2,880,731 + +0.1
2,880,746 - -0.2
2,880,802 + -0.4

Or see this region's nucleotide sequence