Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14465

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14460 and SGL_RS14465 are separated by 9 nucleotidesSGL_RS14465 and SGL_RS14470 are separated by 116 nucleotidesSGL_RS14470 and SGL_RS14475 are separated by 213 nucleotides SGL_RS14460: SGL_RS14460 - glycosyltransferase family 1 protein, at 2,697,151 to 2,698,248 _RS14460 SGL_RS14465: SGL_RS14465 - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 2,698,258 to 2,699,145 _RS14465 SGL_RS14470: SGL_RS14470 - hypothetical protein, at 2,699,262 to 2,699,855 _RS14470 SGL_RS14475: SGL_RS14475 - alpha/beta hydrolase, at 2,700,069 to 2,700,818 _RS14475 Position (kb) 2698 2699 2700Strain fitness (log2 ratio) -1 0 1 2at 2697.496 kb on + strand, within SGL_RS14460at 2697.564 kb on + strand, within SGL_RS14460at 2699.156 kb on + strandat 2699.172 kb on - strandat 2699.214 kb on + strandat 2699.286 kb on - strandat 2699.287 kb on + strandat 2699.295 kb on - strandat 2699.350 kb on - strand, within SGL_RS14470at 2699.357 kb on + strand, within SGL_RS14470at 2699.630 kb on + strand, within SGL_RS14470at 2699.633 kb on - strand, within SGL_RS14470at 2699.742 kb on - strand, within SGL_RS14470at 2700.103 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
remove
2,697,496 + SGL_RS14460 0.31 -1.1
2,697,564 + SGL_RS14460 0.38 +2.5
2,699,156 + +0.2
2,699,172 - +0.5
2,699,214 + -0.5
2,699,286 - -0.4
2,699,287 + +1.2
2,699,295 - +0.1
2,699,350 - SGL_RS14470 0.15 -0.0
2,699,357 + SGL_RS14470 0.16 -0.0
2,699,630 + SGL_RS14470 0.62 +0.1
2,699,633 - SGL_RS14470 0.62 +0.1
2,699,742 - SGL_RS14470 0.81 +0.0
2,700,103 + +0.2

Or see this region's nucleotide sequence