Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14280

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14270 and SGL_RS14275 are separated by 70 nucleotidesSGL_RS14275 and SGL_RS14280 are separated by 255 nucleotidesSGL_RS14280 and SGL_RS19475 are separated by 225 nucleotidesSGL_RS19475 and SGL_RS14285 are separated by 54 nucleotides SGL_RS14270: SGL_RS14270 - folate-binding protein YgfZ, at 2,656,139 to 2,657,077 _RS14270 SGL_RS14275: SGL_RS14275 - hypothetical protein, at 2,657,148 to 2,657,594 _RS14275 SGL_RS14280: SGL_RS14280 - adenosylcobinamide-GDP ribazoletransferase, at 2,657,850 to 2,658,632 _RS14280 SGL_RS19475: SGL_RS19475 - hypothetical protein, at 2,658,858 to 2,659,025 _RS19475 SGL_RS14285: SGL_RS14285 - hypothetical protein, at 2,659,080 to 2,659,865 _RS14285 Position (kb) 2657 2658 2659Strain fitness (log2 ratio) -2 -1 0 1at 2656.863 kb on + strand, within SGL_RS14270at 2656.905 kb on + strand, within SGL_RS14270at 2656.913 kb on - strand, within SGL_RS14270at 2656.922 kb on - strand, within SGL_RS14270at 2656.938 kb on + strand, within SGL_RS14270at 2656.990 kb on + strandat 2656.998 kb on - strandat 2657.000 kb on - strandat 2657.137 kb on + strandat 2657.193 kb on + strand, within SGL_RS14275at 2657.196 kb on - strand, within SGL_RS14275at 2657.224 kb on + strand, within SGL_RS14275at 2657.246 kb on + strand, within SGL_RS14275at 2657.307 kb on + strand, within SGL_RS14275at 2657.396 kb on + strand, within SGL_RS14275at 2657.411 kb on - strand, within SGL_RS14275at 2657.413 kb on + strand, within SGL_RS14275at 2657.457 kb on - strand, within SGL_RS14275at 2657.489 kb on + strand, within SGL_RS14275at 2657.605 kb on - strandat 2657.893 kb on + strandat 2658.020 kb on + strand, within SGL_RS14280at 2658.118 kb on + strand, within SGL_RS14280at 2658.197 kb on + strand, within SGL_RS14280at 2658.324 kb on + strand, within SGL_RS14280at 2658.332 kb on - strand, within SGL_RS14280at 2658.510 kb on + strand, within SGL_RS14280at 2658.696 kb on - strandat 2658.815 kb on - strandat 2658.816 kb on - strandat 2658.982 kb on + strand, within SGL_RS19475at 2658.990 kb on - strand, within SGL_RS19475at 2659.347 kb on + strand, within SGL_RS14285at 2659.498 kb on - strand, within SGL_RS14285at 2659.539 kb on + strand, within SGL_RS14285

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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2,656,863 + SGL_RS14270 0.77 +0.5
2,656,905 + SGL_RS14270 0.82 +0.1
2,656,913 - SGL_RS14270 0.82 +0.8
2,656,922 - SGL_RS14270 0.83 +0.1
2,656,938 + SGL_RS14270 0.85 -0.4
2,656,990 + -0.1
2,656,998 - -0.2
2,657,000 - +0.2
2,657,137 + +0.9
2,657,193 + SGL_RS14275 0.10 +0.0
2,657,196 - SGL_RS14275 0.11 -0.2
2,657,224 + SGL_RS14275 0.17 +0.2
2,657,246 + SGL_RS14275 0.22 -0.9
2,657,307 + SGL_RS14275 0.36 +0.3
2,657,396 + SGL_RS14275 0.55 +0.5
2,657,411 - SGL_RS14275 0.59 -0.2
2,657,413 + SGL_RS14275 0.59 -0.0
2,657,457 - SGL_RS14275 0.69 -0.3
2,657,489 + SGL_RS14275 0.76 +0.2
2,657,605 - +0.5
2,657,893 + -1.1
2,658,020 + SGL_RS14280 0.22 -1.1
2,658,118 + SGL_RS14280 0.34 -0.1
2,658,197 + SGL_RS14280 0.44 -0.4
2,658,324 + SGL_RS14280 0.61 +0.2
2,658,332 - SGL_RS14280 0.62 -1.6
2,658,510 + SGL_RS14280 0.84 -1.4
2,658,696 - -0.0
2,658,815 - -0.1
2,658,816 - -0.1
2,658,982 + SGL_RS19475 0.74 -0.3
2,658,990 - SGL_RS19475 0.79 -1.4
2,659,347 + SGL_RS14285 0.34 -2.4
2,659,498 - SGL_RS14285 0.53 -1.1
2,659,539 + SGL_RS14285 0.58 +0.1

Or see this region's nucleotide sequence