Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12345

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12340 and SGL_RS12345 are separated by 158 nucleotidesSGL_RS12345 and SGL_RS12350 are separated by 123 nucleotides SGL_RS12340: SGL_RS12340 - hypothetical protein, at 2,228,445 to 2,230,328 _RS12340 SGL_RS12345: SGL_RS12345 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 2,230,487 to 2,231,515 _RS12345 SGL_RS12350: SGL_RS12350 - MFS transporter, at 2,231,639 to 2,233,036 _RS12350 Position (kb) 2230 2231 2232Strain fitness (log2 ratio) -3 -2 -1 0 1at 2229.489 kb on - strand, within SGL_RS12340at 2229.546 kb on + strand, within SGL_RS12340at 2229.605 kb on - strand, within SGL_RS12340at 2229.841 kb on - strand, within SGL_RS12340at 2230.040 kb on + strand, within SGL_RS12340at 2230.048 kb on - strand, within SGL_RS12340at 2230.137 kb on + strand, within SGL_RS12340at 2230.137 kb on + strand, within SGL_RS12340at 2230.137 kb on + strand, within SGL_RS12340at 2230.147 kb on + strandat 2230.302 kb on + strandat 2230.333 kb on - strandat 2230.395 kb on + strandat 2230.398 kb on - strandat 2231.545 kb on + strandat 2231.648 kb on + strandat 2231.715 kb on - strandat 2232.389 kb on + strand, within SGL_RS12350at 2232.396 kb on + strand, within SGL_RS12350at 2232.508 kb on - strand, within SGL_RS12350

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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2,229,489 - SGL_RS12340 0.55 -0.4
2,229,546 + SGL_RS12340 0.58 +0.3
2,229,605 - SGL_RS12340 0.62 -3.0
2,229,841 - SGL_RS12340 0.74 -0.6
2,230,040 + SGL_RS12340 0.85 -0.3
2,230,048 - SGL_RS12340 0.85 -0.9
2,230,137 + SGL_RS12340 0.90 -0.3
2,230,137 + SGL_RS12340 0.90 -0.8
2,230,137 + SGL_RS12340 0.90 -0.5
2,230,147 + -0.7
2,230,302 + -0.5
2,230,333 - +0.6
2,230,395 + -0.2
2,230,398 - -0.9
2,231,545 + -0.4
2,231,648 + -0.5
2,231,715 - +0.0
2,232,389 + SGL_RS12350 0.54 +0.1
2,232,396 + SGL_RS12350 0.54 -0.2
2,232,508 - SGL_RS12350 0.62 -0.0

Or see this region's nucleotide sequence