Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09710

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09705 and SGL_RS09710 are separated by 147 nucleotidesSGL_RS09710 and SGL_RS09715 are separated by 183 nucleotides SGL_RS09705: SGL_RS09705 - F0F1 ATP synthase subunit beta, at 1,666,932 to 1,668,383 _RS09705 SGL_RS09710: SGL_RS09710 - ATP synthase F1 subunit epsilon, at 1,668,531 to 1,668,941 _RS09710 SGL_RS09715: SGL_RS09715 - pitrilysin family protein, at 1,669,125 to 1,670,642 _RS09715 Position (kb) 1668 1669Strain fitness (log2 ratio) -2 -1 0 1at 1668.936 kb on + strandat 1668.956 kb on - strandat 1668.967 kb on - strandat 1669.300 kb on + strand, within SGL_RS09715at 1669.624 kb on + strand, within SGL_RS09715at 1669.647 kb on + strand, within SGL_RS09715at 1669.783 kb on + strand, within SGL_RS09715at 1669.808 kb on - strand, within SGL_RS09715at 1669.875 kb on - strand, within SGL_RS09715at 1669.889 kb on - strand, within SGL_RS09715

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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1,668,936 + +0.1
1,668,956 - +0.1
1,668,967 - +0.6
1,669,300 + SGL_RS09715 0.12 -1.7
1,669,624 + SGL_RS09715 0.33 -0.5
1,669,647 + SGL_RS09715 0.34 -0.4
1,669,783 + SGL_RS09715 0.43 -0.4
1,669,808 - SGL_RS09715 0.45 -2.4
1,669,875 - SGL_RS09715 0.49 -0.9
1,669,889 - SGL_RS09715 0.50 -0.4

Or see this region's nucleotide sequence