Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08970

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08965 and SGL_RS08970 are separated by 509 nucleotidesSGL_RS08970 and SGL_RS08975 are separated by 55 nucleotides SGL_RS08965: SGL_RS08965 - chlorophyll a/b binding light-harvesting protein, at 1,517,576 to 1,518,604 _RS08965 SGL_RS08970: SGL_RS08970 - ribosome biogenesis GTPase YlqF, at 1,519,114 to 1,519,953 _RS08970 SGL_RS08975: SGL_RS08975 - redox-regulated ATPase YchF, at 1,520,009 to 1,521,100 _RS08975 Position (kb) 1519 1520Strain fitness (log2 ratio) -3 -2 -1 0 1at 1518.237 kb on + strand, within SGL_RS08965at 1518.301 kb on - strand, within SGL_RS08965at 1518.324 kb on - strand, within SGL_RS08965at 1518.342 kb on + strand, within SGL_RS08965at 1518.380 kb on - strand, within SGL_RS08965at 1518.384 kb on - strand, within SGL_RS08965at 1518.426 kb on + strand, within SGL_RS08965at 1518.426 kb on + strand, within SGL_RS08965at 1518.434 kb on - strand, within SGL_RS08965at 1518.434 kb on - strand, within SGL_RS08965at 1518.434 kb on - strand, within SGL_RS08965at 1518.466 kb on + strand, within SGL_RS08965at 1518.474 kb on - strand, within SGL_RS08965at 1518.528 kb on + strandat 1518.747 kb on - strandat 1518.889 kb on + strandat 1518.900 kb on + strandat 1518.908 kb on - strandat 1518.913 kb on - strandat 1519.049 kb on + strandat 1519.064 kb on - strandat 1519.087 kb on - strandat 1519.118 kb on - strandat 1519.118 kb on - strandat 1519.370 kb on - strand, within SGL_RS08970at 1519.549 kb on + strand, within SGL_RS08970at 1519.551 kb on + strand, within SGL_RS08970at 1519.907 kb on + strandat 1519.997 kb on + strandat 1520.014 kb on - strandat 1520.032 kb on + strandat 1520.037 kb on + strandat 1520.075 kb on + strandat 1520.176 kb on + strand, within SGL_RS08975at 1520.328 kb on - strand, within SGL_RS08975at 1520.424 kb on + strand, within SGL_RS08975at 1520.503 kb on + strand, within SGL_RS08975at 1520.582 kb on - strand, within SGL_RS08975at 1520.582 kb on - strand, within SGL_RS08975at 1520.776 kb on + strand, within SGL_RS08975at 1520.840 kb on + strand, within SGL_RS08975at 1520.913 kb on + strand, within SGL_RS08975

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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1,518,237 + SGL_RS08965 0.64 -2.2
1,518,301 - SGL_RS08965 0.70 -1.9
1,518,324 - SGL_RS08965 0.73 -1.4
1,518,342 + SGL_RS08965 0.74 -2.6
1,518,380 - SGL_RS08965 0.78 -2.3
1,518,384 - SGL_RS08965 0.79 -1.0
1,518,426 + SGL_RS08965 0.83 -2.5
1,518,426 + SGL_RS08965 0.83 -1.5
1,518,434 - SGL_RS08965 0.83 -1.3
1,518,434 - SGL_RS08965 0.83 -1.5
1,518,434 - SGL_RS08965 0.83 -1.8
1,518,466 + SGL_RS08965 0.86 -1.9
1,518,474 - SGL_RS08965 0.87 -0.9
1,518,528 + -3.0
1,518,747 - -2.2
1,518,889 + -0.3
1,518,900 + -0.3
1,518,908 - -0.2
1,518,913 - -0.2
1,519,049 + -0.2
1,519,064 - +0.1
1,519,087 - -0.3
1,519,118 - +0.9
1,519,118 - +0.0
1,519,370 - SGL_RS08970 0.30 -1.0
1,519,549 + SGL_RS08970 0.52 -1.0
1,519,551 + SGL_RS08970 0.52 -1.4
1,519,907 + -1.4
1,519,997 + +0.1
1,520,014 - -0.7
1,520,032 + -0.1
1,520,037 + -0.4
1,520,075 + -0.2
1,520,176 + SGL_RS08975 0.15 -0.0
1,520,328 - SGL_RS08975 0.29 +0.2
1,520,424 + SGL_RS08975 0.38 -0.1
1,520,503 + SGL_RS08975 0.45 -0.3
1,520,582 - SGL_RS08975 0.52 -0.2
1,520,582 - SGL_RS08975 0.52 -0.7
1,520,776 + SGL_RS08975 0.70 +0.3
1,520,840 + SGL_RS08975 0.76 -0.1
1,520,913 + SGL_RS08975 0.83 -0.4

Or see this region's nucleotide sequence