Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06405

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06395 and SGL_RS19655 overlap by 8 nucleotidesSGL_RS19655 and SGL_RS19565 are separated by 18 nucleotidesSGL_RS19565 and SGL_RS06405 are separated by 290 nucleotidesSGL_RS06405 and SGL_RS06410 are separated by 61 nucleotidesSGL_RS06410 and SGL_RS06415 are separated by 275 nucleotides SGL_RS06395: SGL_RS06395 - type II toxin-antitoxin system VapC family toxin, at 968,487 to 968,900 _RS06395 SGL_RS19655: SGL_RS19655 - hypothetical protein, at 968,893 to 969,294 _RS19655 SGL_RS19565: SGL_RS19565 - hypothetical protein, at 969,313 to 969,471 _RS19565 SGL_RS06405: SGL_RS06405 - threonine-phosphate decarboxylase CobD, at 969,762 to 970,820 _RS06405 SGL_RS06410: SGL_RS06410 - HU family DNA-binding protein, at 970,882 to 971,184 _RS06410 SGL_RS06415: SGL_RS06415 - GNAT family N-acetyltransferase, at 971,460 to 972,284 _RS06415 Position (kb) 969 970 971Strain fitness (log2 ratio) -1 0 1at 969.481 kb on - strandat 969.481 kb on - strandat 969.481 kb on - strandat 969.481 kb on - strandat 970.002 kb on + strand, within SGL_RS06405at 971.475 kb on + strandat 971.732 kb on + strand, within SGL_RS06415at 971.734 kb on + strand, within SGL_RS06415

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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969,481 - +0.1
969,481 - -0.3
969,481 - +0.1
969,481 - +0.2
970,002 + SGL_RS06405 0.23 -0.6
971,475 + +0.0
971,732 + SGL_RS06415 0.33 -0.0
971,734 + SGL_RS06415 0.33 +0.2

Or see this region's nucleotide sequence