Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04920

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04915 and SGL_RS04920 are separated by 34 nucleotidesSGL_RS04920 and SGL_RS04925 are separated by 187 nucleotidesSGL_RS04925 and SGL_RS04930 are separated by 26 nucleotides SGL_RS04915: SGL_RS04915 - magnesium chelatase ATPase subunit I, at 658,262 to 659,335 _RS04915 SGL_RS04920: SGL_RS04920 - tyrosine--tRNA ligase, at 659,370 to 660,584 _RS04920 SGL_RS04925: SGL_RS04925 - hypothetical protein, at 660,772 to 661,125 _RS04925 SGL_RS04930: SGL_RS04930 - hypothetical protein, at 661,152 to 662,819 _RS04930 Position (kb) 659 660 661Strain fitness (log2 ratio) -1 0 1at 661.040 kb on + strand, within SGL_RS04925at 661.232 kb on + strandat 661.379 kb on - strand, within SGL_RS04930at 661.499 kb on + strand, within SGL_RS04930

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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661,040 + SGL_RS04925 0.76 +0.5
661,232 + +0.2
661,379 - SGL_RS04930 0.14 +0.2
661,499 + SGL_RS04930 0.21 -0.9

Or see this region's nucleotide sequence