Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03345

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03335 and SGL_RS03340 are separated by 27 nucleotidesSGL_RS03340 and SGL_RS03345 are separated by 97 nucleotidesSGL_RS03345 and SGL_RS03350 are separated by 222 nucleotides SGL_RS03335: SGL_RS03335 - prolipoprotein diacylglyceryl transferase, at 314,255 to 315,106 _RS03335 SGL_RS03340: SGL_RS03340 - Uma2 family endonuclease, at 315,134 to 315,784 _RS03340 SGL_RS03345: SGL_RS03345 - oxygen-dependent coproporphyrinogen oxidase, at 315,882 to 316,904 _RS03345 SGL_RS03350: SGL_RS03350 - heme oxygenase (biliverdin-producing), at 317,127 to 317,849 _RS03350 Position (kb) 315 316 317Strain fitness (log2 ratio) -1 0 1at 315.217 kb on + strand, within SGL_RS03340at 315.290 kb on + strand, within SGL_RS03340at 315.442 kb on + strand, within SGL_RS03340at 315.775 kb on - strandat 315.855 kb on + strandat 315.863 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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315,217 + SGL_RS03340 0.13 +1.5
315,290 + SGL_RS03340 0.24 -0.3
315,442 + SGL_RS03340 0.47 -0.5
315,775 - -0.1
315,855 + -0.1
315,863 - +0.3

Or see this region's nucleotide sequence