Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02435

Experiment: ClNH4 10 mM as N source, buffered with 20 mM TES pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02430 and SGL_RS02435 are separated by 195 nucleotidesSGL_RS02435 and SGL_RS02440 are separated by 121 nucleotides SGL_RS02430: SGL_RS02430 - ATP-binding protein, at 124,452 to 126,443 _RS02430 SGL_RS02435: SGL_RS02435 - photosystem I reaction center subunit II, at 126,639 to 127,064 _RS02435 SGL_RS02440: SGL_RS02440 - anthranilate synthase component I, at 127,186 to 128,712 _RS02440 Position (kb) 126 127 128Strain fitness (log2 ratio) -1 0 1at 126.489 kb on + strandat 126.497 kb on - strandat 126.513 kb on + strandat 126.513 kb on + strandat 126.521 kb on - strandat 126.525 kb on + strandat 126.533 kb on - strandat 127.461 kb on + strand, within SGL_RS02440

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Per-strain Table

Position Strand Gene LocusTag Fraction ClNH4 10 mM as N source, buffered with 20 mM TES pH8
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126,489 + -0.5
126,497 - +1.1
126,513 + -0.1
126,513 + +0.6
126,521 - -0.2
126,525 + -0.4
126,533 - +0.4
127,461 + SGL_RS02440 0.18 +1.5

Or see this region's nucleotide sequence