Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02950 and CCNA_02951 overlap by 4 nucleotides CCNA_02951 and CCNA_02952 are separated by 256 nucleotides CCNA_02952 and CCNA_02953 overlap by 4 nucleotides
CCNA_02950: CCNA_02950 - hypothetical protein, at 3,109,890 to 3,111,152
_02950
CCNA_02951: CCNA_02951 - WbqC-like family protein, at 3,111,149 to 3,111,856
_02951
CCNA_02952: CCNA_02952 - hypothetical protein, at 3,112,113 to 3,112,238
_02952
CCNA_02953: CCNA_02953 - N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase, at 3,112,235 to 3,113,203
_02953
Position (kb)
3112
3113 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3111.202 kb on + strand at 3111.208 kb on + strand at 3111.210 kb on - strand at 3111.282 kb on + strand at 3111.287 kb on - strand, within CCNA_02951 at 3111.305 kb on - strand, within CCNA_02951 at 3111.321 kb on + strand, within CCNA_02951 at 3111.324 kb on - strand, within CCNA_02951 at 3111.375 kb on - strand, within CCNA_02951 at 3111.392 kb on + strand, within CCNA_02951 at 3111.397 kb on + strand, within CCNA_02951 at 3111.405 kb on - strand, within CCNA_02951 at 3111.463 kb on + strand, within CCNA_02951 at 3111.463 kb on + strand, within CCNA_02951 at 3111.464 kb on + strand, within CCNA_02951 at 3111.480 kb on - strand, within CCNA_02951 at 3111.536 kb on + strand, within CCNA_02951 at 3111.556 kb on + strand, within CCNA_02951 at 3111.580 kb on - strand, within CCNA_02951 at 3111.585 kb on + strand, within CCNA_02951 at 3111.637 kb on - strand, within CCNA_02951 at 3111.648 kb on + strand, within CCNA_02951 at 3111.655 kb on + strand, within CCNA_02951 at 3111.655 kb on + strand, within CCNA_02951 at 3111.655 kb on + strand, within CCNA_02951 at 3111.655 kb on + strand, within CCNA_02951 at 3111.655 kb on + strand, within CCNA_02951 at 3111.655 kb on + strand, within CCNA_02951 at 3111.655 kb on + strand, within CCNA_02951 at 3111.657 kb on + strand, within CCNA_02951 at 3111.663 kb on - strand, within CCNA_02951 at 3111.663 kb on - strand, within CCNA_02951 at 3111.706 kb on + strand, within CCNA_02951 at 3111.714 kb on - strand, within CCNA_02951 at 3111.741 kb on - strand, within CCNA_02951 at 3111.741 kb on - strand, within CCNA_02951 at 3111.741 kb on - strand, within CCNA_02951 at 3111.759 kb on + strand, within CCNA_02951 at 3111.768 kb on + strand, within CCNA_02951 at 3111.776 kb on - strand, within CCNA_02951 at 3111.781 kb on - strand, within CCNA_02951 at 3111.830 kb on - strand at 3111.945 kb on + strand at 3111.973 kb on + strand at 3111.981 kb on + strand at 3111.981 kb on + strand at 3111.989 kb on - strand at 3111.989 kb on - strand at 3111.989 kb on - strand at 3111.994 kb on + strand at 3112.002 kb on - strand at 3112.002 kb on - strand at 3112.020 kb on + strand at 3112.030 kb on + strand at 3112.030 kb on + strand at 3112.038 kb on - strand at 3112.049 kb on + strand at 3112.051 kb on + strand at 3112.138 kb on + strand, within CCNA_02952 at 3112.160 kb on - strand, within CCNA_02952 at 3112.160 kb on - strand, within CCNA_02952 at 3112.268 kb on + strand at 3112.287 kb on + strand at 3112.336 kb on + strand, within CCNA_02953 at 3112.336 kb on + strand, within CCNA_02953 at 3112.341 kb on + strand, within CCNA_02953 at 3112.344 kb on - strand, within CCNA_02953 at 3112.344 kb on - strand, within CCNA_02953 at 3112.344 kb on - strand, within CCNA_02953 at 3112.344 kb on - strand, within CCNA_02953 at 3112.349 kb on - strand, within CCNA_02953 at 3112.351 kb on + strand, within CCNA_02953 at 3112.351 kb on + strand, within CCNA_02953 at 3112.351 kb on + strand, within CCNA_02953 at 3112.351 kb on + strand, within CCNA_02953 at 3112.363 kb on + strand, within CCNA_02953 at 3112.363 kb on + strand, within CCNA_02953 at 3112.371 kb on - strand, within CCNA_02953 at 3112.422 kb on - strand, within CCNA_02953 at 3112.478 kb on + strand, within CCNA_02953 at 3112.496 kb on + strand, within CCNA_02953 at 3112.504 kb on - strand, within CCNA_02953 at 3112.517 kb on - strand, within CCNA_02953 at 3112.522 kb on - strand, within CCNA_02953 at 3112.562 kb on + strand, within CCNA_02953 at 3112.570 kb on - strand, within CCNA_02953 at 3112.570 kb on - strand, within CCNA_02953 at 3112.588 kb on + strand, within CCNA_02953 at 3112.595 kb on + strand, within CCNA_02953 at 3112.684 kb on + strand, within CCNA_02953 at 3112.751 kb on + strand, within CCNA_02953 at 3112.817 kb on + strand, within CCNA_02953 at 3112.869 kb on + strand, within CCNA_02953 at 3112.870 kb on + strand, within CCNA_02953 at 3112.870 kb on + strand, within CCNA_02953 at 3112.870 kb on + strand, within CCNA_02953 at 3112.904 kb on + strand, within CCNA_02953 at 3112.923 kb on - strand, within CCNA_02953 at 3112.923 kb on - strand, within CCNA_02953 at 3113.015 kb on + strand, within CCNA_02953 at 3113.019 kb on + strand, within CCNA_02953 at 3113.088 kb on + strand, within CCNA_02953 at 3113.088 kb on + strand, within CCNA_02953 at 3113.088 kb on - strand, within CCNA_02953 at 3113.090 kb on + strand, within CCNA_02953 at 3113.105 kb on + strand, within CCNA_02953 at 3113.136 kb on + strand at 3113.163 kb on + strand at 3113.171 kb on - strand at 3113.197 kb on + strand at 3113.197 kb on + strand at 3113.197 kb on + strand at 3113.197 kb on + strand at 3113.197 kb on + strand at 3113.197 kb on + strand at 3113.205 kb on - strand at 3113.205 kb on - strand at 3113.205 kb on - strand at 3113.205 kb on - strand at 3113.205 kb on - strand at 3113.205 kb on - strand at 3113.205 kb on - strand at 3113.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,111,202 + +1.2 3,111,208 + -1.9 3,111,210 - +1.1 3,111,282 + +3.2 3,111,287 - CCNA_02951 0.19 -0.8 3,111,305 - CCNA_02951 0.22 +1.0 3,111,321 + CCNA_02951 0.24 +0.2 3,111,324 - CCNA_02951 0.25 -0.1 3,111,375 - CCNA_02951 0.32 +0.7 3,111,392 + CCNA_02951 0.34 +0.1 3,111,397 + CCNA_02951 0.35 +1.1 3,111,405 - CCNA_02951 0.36 +1.9 3,111,463 + CCNA_02951 0.44 +2.3 3,111,463 + CCNA_02951 0.44 +0.3 3,111,464 + CCNA_02951 0.44 +1.3 3,111,480 - CCNA_02951 0.47 +0.8 3,111,536 + CCNA_02951 0.55 +1.5 3,111,556 + CCNA_02951 0.57 +1.2 3,111,580 - CCNA_02951 0.61 -1.2 3,111,585 + CCNA_02951 0.62 -1.3 3,111,637 - CCNA_02951 0.69 -0.1 3,111,648 + CCNA_02951 0.70 -0.5 3,111,655 + CCNA_02951 0.71 -1.8 3,111,655 + CCNA_02951 0.71 +1.1 3,111,655 + CCNA_02951 0.71 +1.2 3,111,655 + CCNA_02951 0.71 +1.6 3,111,655 + CCNA_02951 0.71 -0.6 3,111,655 + CCNA_02951 0.71 +0.9 3,111,655 + CCNA_02951 0.71 +0.6 3,111,657 + CCNA_02951 0.72 +1.1 3,111,663 - CCNA_02951 0.73 -1.4 3,111,663 - CCNA_02951 0.73 +0.3 3,111,706 + CCNA_02951 0.79 +1.2 3,111,714 - CCNA_02951 0.80 +1.1 3,111,741 - CCNA_02951 0.84 -0.2 3,111,741 - CCNA_02951 0.84 -1.0 3,111,741 - CCNA_02951 0.84 -1.5 3,111,759 + CCNA_02951 0.86 +0.3 3,111,768 + CCNA_02951 0.87 +0.1 3,111,776 - CCNA_02951 0.89 +1.5 3,111,781 - CCNA_02951 0.89 -0.1 3,111,830 - +0.8 3,111,945 + +3.2 3,111,973 + +0.3 3,111,981 + +1.3 3,111,981 + -0.0 3,111,989 - -0.4 3,111,989 - -1.1 3,111,989 - +1.2 3,111,994 + +0.8 3,112,002 - -2.1 3,112,002 - -1.1 3,112,020 + +0.7 3,112,030 + +0.7 3,112,030 + -0.6 3,112,038 - -0.2 3,112,049 + -0.5 3,112,051 + -1.9 3,112,138 + CCNA_02952 0.20 -0.9 3,112,160 - CCNA_02952 0.37 -2.0 3,112,160 - CCNA_02952 0.37 -1.1 3,112,268 + -0.2 3,112,287 + -0.5 3,112,336 + CCNA_02953 0.10 -0.6 3,112,336 + CCNA_02953 0.10 -0.9 3,112,341 + CCNA_02953 0.11 -0.7 3,112,344 - CCNA_02953 0.11 -0.9 3,112,344 - CCNA_02953 0.11 +0.7 3,112,344 - CCNA_02953 0.11 +1.2 3,112,344 - CCNA_02953 0.11 -0.4 3,112,349 - CCNA_02953 0.12 -1.5 3,112,351 + CCNA_02953 0.12 -0.5 3,112,351 + CCNA_02953 0.12 -1.9 3,112,351 + CCNA_02953 0.12 +0.9 3,112,351 + CCNA_02953 0.12 +3.6 3,112,363 + CCNA_02953 0.13 +1.2 3,112,363 + CCNA_02953 0.13 -1.2 3,112,371 - CCNA_02953 0.14 -0.6 3,112,422 - CCNA_02953 0.19 -0.2 3,112,478 + CCNA_02953 0.25 -0.8 3,112,496 + CCNA_02953 0.27 +1.3 3,112,504 - CCNA_02953 0.28 -0.1 3,112,517 - CCNA_02953 0.29 -1.6 3,112,522 - CCNA_02953 0.30 +1.5 3,112,562 + CCNA_02953 0.34 +0.2 3,112,570 - CCNA_02953 0.35 +0.4 3,112,570 - CCNA_02953 0.35 +1.0 3,112,588 + CCNA_02953 0.36 -0.4 3,112,595 + CCNA_02953 0.37 -0.1 3,112,684 + CCNA_02953 0.46 -0.9 3,112,751 + CCNA_02953 0.53 +1.6 3,112,817 + CCNA_02953 0.60 -0.9 3,112,869 + CCNA_02953 0.65 -0.5 3,112,870 + CCNA_02953 0.66 +1.3 3,112,870 + CCNA_02953 0.66 -2.6 3,112,870 + CCNA_02953 0.66 -1.2 3,112,904 + CCNA_02953 0.69 -0.2 3,112,923 - CCNA_02953 0.71 -0.6 3,112,923 - CCNA_02953 0.71 +1.0 3,113,015 + CCNA_02953 0.80 -0.7 3,113,019 + CCNA_02953 0.81 +1.0 3,113,088 + CCNA_02953 0.88 +0.8 3,113,088 + CCNA_02953 0.88 -1.1 3,113,088 - CCNA_02953 0.88 -0.6 3,113,090 + CCNA_02953 0.88 +0.6 3,113,105 + CCNA_02953 0.90 -0.1 3,113,136 + -0.5 3,113,163 + -1.3 3,113,171 - -2.0 3,113,197 + -0.0 3,113,197 + +2.0 3,113,197 + -0.5 3,113,197 + -2.4 3,113,197 + +0.2 3,113,197 + -1.2 3,113,205 - +0.8 3,113,205 - -0.8 3,113,205 - -0.5 3,113,205 - +0.3 3,113,205 - -1.1 3,113,205 - -0.0 3,113,205 - +0.6 3,113,220 + -1.6
Or see this region's nucleotide sequence