Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02743 and CCNA_02744 are separated by 171 nucleotides CCNA_02744 and CCNA_02745 are separated by 359 nucleotides
CCNA_02743: CCNA_02743 - TonB dependent receptor, at 2,903,886 to 2,906,294
_02743
CCNA_02744: CCNA_02744 - GntR-family transcriptional regulator, at 2,906,466 to 2,907,182
_02744
CCNA_02745: CCNA_02745 - TetR-family transcriptional regulator, at 2,907,542 to 2,908,183
_02745
Position (kb)
2906
2907
2908 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2905.473 kb on + strand, within CCNA_02743 at 2905.480 kb on - strand, within CCNA_02743 at 2905.481 kb on - strand, within CCNA_02743 at 2905.506 kb on - strand, within CCNA_02743 at 2905.508 kb on - strand, within CCNA_02743 at 2905.522 kb on - strand, within CCNA_02743 at 2905.548 kb on + strand, within CCNA_02743 at 2905.563 kb on - strand, within CCNA_02743 at 2905.583 kb on + strand, within CCNA_02743 at 2905.584 kb on - strand, within CCNA_02743 at 2905.652 kb on + strand, within CCNA_02743 at 2905.657 kb on + strand, within CCNA_02743 at 2905.660 kb on - strand, within CCNA_02743 at 2905.665 kb on - strand, within CCNA_02743 at 2905.670 kb on - strand, within CCNA_02743 at 2905.691 kb on - strand, within CCNA_02743 at 2905.698 kb on - strand, within CCNA_02743 at 2905.707 kb on + strand, within CCNA_02743 at 2905.743 kb on + strand, within CCNA_02743 at 2905.762 kb on + strand, within CCNA_02743 at 2905.826 kb on - strand, within CCNA_02743 at 2905.826 kb on - strand, within CCNA_02743 at 2905.839 kb on - strand, within CCNA_02743 at 2905.867 kb on - strand, within CCNA_02743 at 2905.889 kb on + strand, within CCNA_02743 at 2905.889 kb on + strand, within CCNA_02743 at 2905.981 kb on + strand, within CCNA_02743 at 2906.016 kb on - strand, within CCNA_02743 at 2906.042 kb on + strand, within CCNA_02743 at 2906.042 kb on - strand, within CCNA_02743 at 2906.042 kb on - strand, within CCNA_02743 at 2906.092 kb on + strand at 2906.092 kb on + strand at 2906.100 kb on - strand at 2906.105 kb on - strand at 2906.123 kb on - strand at 2906.128 kb on + strand at 2906.150 kb on + strand at 2906.155 kb on + strand at 2906.155 kb on + strand at 2906.155 kb on + strand at 2906.160 kb on + strand at 2906.163 kb on - strand at 2906.163 kb on - strand at 2906.163 kb on - strand at 2906.163 kb on - strand at 2906.172 kb on + strand at 2906.246 kb on - strand at 2906.294 kb on - strand at 2906.340 kb on + strand at 2906.348 kb on - strand at 2906.456 kb on + strand at 2906.465 kb on - strand at 2906.526 kb on + strand at 2906.553 kb on - strand, within CCNA_02744 at 2906.632 kb on - strand, within CCNA_02744 at 2906.638 kb on + strand, within CCNA_02744 at 2906.638 kb on + strand, within CCNA_02744 at 2906.638 kb on + strand at 2906.646 kb on - strand, within CCNA_02744 at 2906.646 kb on - strand, within CCNA_02744 at 2906.672 kb on + strand, within CCNA_02744 at 2906.706 kb on + strand, within CCNA_02744 at 2906.751 kb on - strand, within CCNA_02744 at 2906.768 kb on - strand, within CCNA_02744 at 2906.790 kb on + strand, within CCNA_02744 at 2906.826 kb on + strand at 2906.836 kb on - strand, within CCNA_02744 at 2906.836 kb on - strand, within CCNA_02744 at 2906.836 kb on - strand, within CCNA_02744 at 2906.836 kb on - strand, within CCNA_02744 at 2906.861 kb on + strand, within CCNA_02744 at 2906.861 kb on + strand, within CCNA_02744 at 2906.861 kb on + strand, within CCNA_02744 at 2906.869 kb on - strand, within CCNA_02744 at 2906.869 kb on - strand, within CCNA_02744 at 2906.897 kb on - strand, within CCNA_02744 at 2906.905 kb on + strand, within CCNA_02744 at 2906.931 kb on + strand, within CCNA_02744 at 2906.934 kb on - strand, within CCNA_02744 at 2906.976 kb on + strand, within CCNA_02744 at 2906.976 kb on + strand, within CCNA_02744 at 2906.976 kb on + strand, within CCNA_02744 at 2906.984 kb on - strand, within CCNA_02744 at 2906.984 kb on - strand, within CCNA_02744 at 2906.984 kb on - strand, within CCNA_02744 at 2906.984 kb on - strand, within CCNA_02744 at 2906.984 kb on - strand, within CCNA_02744 at 2907.017 kb on - strand, within CCNA_02744 at 2907.020 kb on + strand, within CCNA_02744 at 2907.047 kb on + strand, within CCNA_02744 at 2907.055 kb on - strand, within CCNA_02744 at 2907.058 kb on + strand, within CCNA_02744 at 2907.077 kb on + strand, within CCNA_02744 at 2907.180 kb on - strand at 2907.216 kb on - strand at 2907.280 kb on - strand at 2907.301 kb on + strand at 2907.306 kb on + strand at 2907.311 kb on + strand at 2907.319 kb on - strand at 2907.319 kb on - strand at 2907.377 kb on + strand at 2907.377 kb on + strand at 2907.380 kb on - strand at 2907.385 kb on - strand at 2907.411 kb on - strand at 2907.427 kb on + strand at 2907.435 kb on - strand at 2907.447 kb on + strand at 2907.448 kb on + strand at 2907.448 kb on - strand at 2907.455 kb on - strand at 2907.482 kb on - strand at 2907.487 kb on + strand at 2907.523 kb on + strand at 2907.523 kb on + strand at 2907.531 kb on - strand at 2907.613 kb on + strand, within CCNA_02745 at 2907.701 kb on - strand, within CCNA_02745 at 2907.728 kb on - strand, within CCNA_02745 at 2907.743 kb on - strand, within CCNA_02745 at 2907.780 kb on - strand, within CCNA_02745 at 2907.780 kb on - strand, within CCNA_02745 at 2907.803 kb on - strand, within CCNA_02745 at 2907.839 kb on + strand, within CCNA_02745 at 2907.860 kb on + strand, within CCNA_02745 at 2907.862 kb on + strand, within CCNA_02745 at 2907.862 kb on + strand, within CCNA_02745 at 2907.868 kb on - strand, within CCNA_02745 at 2907.917 kb on - strand, within CCNA_02745 at 2907.918 kb on - strand, within CCNA_02745 at 2907.962 kb on + strand, within CCNA_02745 at 2907.983 kb on - strand, within CCNA_02745 at 2908.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,905,473 + CCNA_02743 0.66 -1.2 2,905,480 - CCNA_02743 0.66 -0.4 2,905,481 - CCNA_02743 0.66 -0.5 2,905,506 - CCNA_02743 0.67 -0.9 2,905,508 - CCNA_02743 0.67 +1.2 2,905,522 - CCNA_02743 0.68 -1.6 2,905,548 + CCNA_02743 0.69 +1.1 2,905,563 - CCNA_02743 0.70 +2.3 2,905,583 + CCNA_02743 0.70 -0.2 2,905,584 - CCNA_02743 0.70 +3.0 2,905,652 + CCNA_02743 0.73 +1.6 2,905,657 + CCNA_02743 0.74 -0.8 2,905,660 - CCNA_02743 0.74 +0.5 2,905,665 - CCNA_02743 0.74 +0.1 2,905,670 - CCNA_02743 0.74 +0.5 2,905,691 - CCNA_02743 0.75 +0.1 2,905,698 - CCNA_02743 0.75 +0.8 2,905,707 + CCNA_02743 0.76 -1.9 2,905,743 + CCNA_02743 0.77 -1.0 2,905,762 + CCNA_02743 0.78 -0.6 2,905,826 - CCNA_02743 0.81 +0.3 2,905,826 - CCNA_02743 0.81 +0.9 2,905,839 - CCNA_02743 0.81 +0.6 2,905,867 - CCNA_02743 0.82 +0.7 2,905,889 + CCNA_02743 0.83 +3.2 2,905,889 + CCNA_02743 0.83 +0.6 2,905,981 + CCNA_02743 0.87 -1.0 2,906,016 - CCNA_02743 0.88 +2.2 2,906,042 + CCNA_02743 0.89 -0.1 2,906,042 - CCNA_02743 0.89 +0.3 2,906,042 - CCNA_02743 0.89 +1.5 2,906,092 + +1.6 2,906,092 + +2.6 2,906,100 - +1.1 2,906,105 - -1.2 2,906,123 - +0.8 2,906,128 + -0.1 2,906,150 + +1.6 2,906,155 + -0.7 2,906,155 + +2.4 2,906,155 + -0.9 2,906,160 + +0.8 2,906,163 - -1.2 2,906,163 - -0.3 2,906,163 - +3.1 2,906,163 - +1.0 2,906,172 + -2.0 2,906,246 - -0.1 2,906,294 - +0.3 2,906,340 + +1.4 2,906,348 - +2.9 2,906,456 + +1.8 2,906,465 - -0.5 2,906,526 + +0.3 2,906,553 - CCNA_02744 0.12 +0.5 2,906,632 - CCNA_02744 0.23 +1.7 2,906,638 + CCNA_02744 0.24 -0.1 2,906,638 + CCNA_02744 0.24 +0.2 2,906,638 + +2.6 2,906,646 - CCNA_02744 0.25 -0.6 2,906,646 - CCNA_02744 0.25 -1.2 2,906,672 + CCNA_02744 0.29 +2.6 2,906,706 + CCNA_02744 0.33 -0.8 2,906,751 - CCNA_02744 0.40 +1.1 2,906,768 - CCNA_02744 0.42 +0.3 2,906,790 + CCNA_02744 0.45 -0.2 2,906,826 + +0.8 2,906,836 - CCNA_02744 0.52 +1.5 2,906,836 - CCNA_02744 0.52 +0.8 2,906,836 - CCNA_02744 0.52 +1.7 2,906,836 - CCNA_02744 0.52 +2.3 2,906,861 + CCNA_02744 0.55 -2.4 2,906,861 + CCNA_02744 0.55 -0.9 2,906,861 + CCNA_02744 0.55 -1.8 2,906,869 - CCNA_02744 0.56 +0.9 2,906,869 - CCNA_02744 0.56 +0.2 2,906,897 - CCNA_02744 0.60 +2.0 2,906,905 + CCNA_02744 0.61 +3.1 2,906,931 + CCNA_02744 0.65 +0.1 2,906,934 - CCNA_02744 0.65 +1.0 2,906,976 + CCNA_02744 0.71 -0.8 2,906,976 + CCNA_02744 0.71 -0.8 2,906,976 + CCNA_02744 0.71 +1.1 2,906,984 - CCNA_02744 0.72 +1.1 2,906,984 - CCNA_02744 0.72 -0.3 2,906,984 - CCNA_02744 0.72 +0.4 2,906,984 - CCNA_02744 0.72 +0.5 2,906,984 - CCNA_02744 0.72 +0.6 2,907,017 - CCNA_02744 0.77 +1.8 2,907,020 + CCNA_02744 0.77 +0.5 2,907,047 + CCNA_02744 0.81 -0.6 2,907,055 - CCNA_02744 0.82 +0.0 2,907,058 + CCNA_02744 0.83 +1.1 2,907,077 + CCNA_02744 0.85 +1.1 2,907,180 - +0.5 2,907,216 - -0.4 2,907,280 - +0.4 2,907,301 + -1.6 2,907,306 + -0.6 2,907,311 + -0.2 2,907,319 - -0.3 2,907,319 - +0.1 2,907,377 + -1.6 2,907,377 + +0.2 2,907,380 - +0.5 2,907,385 - -0.9 2,907,411 - -1.9 2,907,427 + -0.7 2,907,435 - +0.5 2,907,447 + -2.2 2,907,448 + -1.8 2,907,448 - +0.8 2,907,455 - -1.8 2,907,482 - -1.2 2,907,487 + +0.5 2,907,523 + -1.6 2,907,523 + +0.3 2,907,531 - +2.7 2,907,613 + CCNA_02745 0.11 +0.5 2,907,701 - CCNA_02745 0.25 +1.1 2,907,728 - CCNA_02745 0.29 +0.5 2,907,743 - CCNA_02745 0.31 -0.8 2,907,780 - CCNA_02745 0.37 +0.5 2,907,780 - CCNA_02745 0.37 +2.1 2,907,803 - CCNA_02745 0.41 +0.7 2,907,839 + CCNA_02745 0.46 -0.5 2,907,860 + CCNA_02745 0.50 +0.7 2,907,862 + CCNA_02745 0.50 +0.9 2,907,862 + CCNA_02745 0.50 +0.7 2,907,868 - CCNA_02745 0.51 -0.6 2,907,917 - CCNA_02745 0.58 -1.0 2,907,918 - CCNA_02745 0.59 +0.8 2,907,962 + CCNA_02745 0.65 -0.0 2,907,983 - CCNA_02745 0.69 -0.5 2,908,178 + -1.5
Or see this region's nucleotide sequence