Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02744

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02743 and CCNA_02744 are separated by 171 nucleotidesCCNA_02744 and CCNA_02745 are separated by 359 nucleotides CCNA_02743: CCNA_02743 - TonB dependent receptor, at 2,903,886 to 2,906,294 _02743 CCNA_02744: CCNA_02744 - GntR-family transcriptional regulator, at 2,906,466 to 2,907,182 _02744 CCNA_02745: CCNA_02745 - TetR-family transcriptional regulator, at 2,907,542 to 2,908,183 _02745 Position (kb) 2906 2907 2908Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2905.473 kb on + strand, within CCNA_02743at 2905.480 kb on - strand, within CCNA_02743at 2905.481 kb on - strand, within CCNA_02743at 2905.506 kb on - strand, within CCNA_02743at 2905.508 kb on - strand, within CCNA_02743at 2905.522 kb on - strand, within CCNA_02743at 2905.548 kb on + strand, within CCNA_02743at 2905.563 kb on - strand, within CCNA_02743at 2905.583 kb on + strand, within CCNA_02743at 2905.584 kb on - strand, within CCNA_02743at 2905.652 kb on + strand, within CCNA_02743at 2905.657 kb on + strand, within CCNA_02743at 2905.660 kb on - strand, within CCNA_02743at 2905.665 kb on - strand, within CCNA_02743at 2905.670 kb on - strand, within CCNA_02743at 2905.691 kb on - strand, within CCNA_02743at 2905.698 kb on - strand, within CCNA_02743at 2905.707 kb on + strand, within CCNA_02743at 2905.743 kb on + strand, within CCNA_02743at 2905.762 kb on + strand, within CCNA_02743at 2905.826 kb on - strand, within CCNA_02743at 2905.826 kb on - strand, within CCNA_02743at 2905.839 kb on - strand, within CCNA_02743at 2905.867 kb on - strand, within CCNA_02743at 2905.889 kb on + strand, within CCNA_02743at 2905.889 kb on + strand, within CCNA_02743at 2905.981 kb on + strand, within CCNA_02743at 2906.016 kb on - strand, within CCNA_02743at 2906.042 kb on + strand, within CCNA_02743at 2906.042 kb on - strand, within CCNA_02743at 2906.042 kb on - strand, within CCNA_02743at 2906.092 kb on + strandat 2906.092 kb on + strandat 2906.100 kb on - strandat 2906.105 kb on - strandat 2906.123 kb on - strandat 2906.128 kb on + strandat 2906.150 kb on + strandat 2906.155 kb on + strandat 2906.155 kb on + strandat 2906.155 kb on + strandat 2906.160 kb on + strandat 2906.163 kb on - strandat 2906.163 kb on - strandat 2906.163 kb on - strandat 2906.163 kb on - strandat 2906.172 kb on + strandat 2906.246 kb on - strandat 2906.294 kb on - strandat 2906.340 kb on + strandat 2906.348 kb on - strandat 2906.456 kb on + strandat 2906.465 kb on - strandat 2906.526 kb on + strandat 2906.553 kb on - strand, within CCNA_02744at 2906.632 kb on - strand, within CCNA_02744at 2906.638 kb on + strand, within CCNA_02744at 2906.638 kb on + strand, within CCNA_02744at 2906.638 kb on + strandat 2906.646 kb on - strand, within CCNA_02744at 2906.646 kb on - strand, within CCNA_02744at 2906.672 kb on + strand, within CCNA_02744at 2906.706 kb on + strand, within CCNA_02744at 2906.751 kb on - strand, within CCNA_02744at 2906.768 kb on - strand, within CCNA_02744at 2906.790 kb on + strand, within CCNA_02744at 2906.826 kb on + strandat 2906.836 kb on - strand, within CCNA_02744at 2906.836 kb on - strand, within CCNA_02744at 2906.836 kb on - strand, within CCNA_02744at 2906.836 kb on - strand, within CCNA_02744at 2906.861 kb on + strand, within CCNA_02744at 2906.861 kb on + strand, within CCNA_02744at 2906.861 kb on + strand, within CCNA_02744at 2906.869 kb on - strand, within CCNA_02744at 2906.869 kb on - strand, within CCNA_02744at 2906.897 kb on - strand, within CCNA_02744at 2906.905 kb on + strand, within CCNA_02744at 2906.931 kb on + strand, within CCNA_02744at 2906.934 kb on - strand, within CCNA_02744at 2906.976 kb on + strand, within CCNA_02744at 2906.976 kb on + strand, within CCNA_02744at 2906.976 kb on + strand, within CCNA_02744at 2906.984 kb on - strand, within CCNA_02744at 2906.984 kb on - strand, within CCNA_02744at 2906.984 kb on - strand, within CCNA_02744at 2906.984 kb on - strand, within CCNA_02744at 2906.984 kb on - strand, within CCNA_02744at 2907.017 kb on - strand, within CCNA_02744at 2907.020 kb on + strand, within CCNA_02744at 2907.047 kb on + strand, within CCNA_02744at 2907.055 kb on - strand, within CCNA_02744at 2907.058 kb on + strand, within CCNA_02744at 2907.077 kb on + strand, within CCNA_02744at 2907.180 kb on - strandat 2907.216 kb on - strandat 2907.280 kb on - strandat 2907.301 kb on + strandat 2907.306 kb on + strandat 2907.311 kb on + strandat 2907.319 kb on - strandat 2907.319 kb on - strandat 2907.377 kb on + strandat 2907.377 kb on + strandat 2907.380 kb on - strandat 2907.385 kb on - strandat 2907.411 kb on - strandat 2907.427 kb on + strandat 2907.435 kb on - strandat 2907.447 kb on + strandat 2907.448 kb on + strandat 2907.448 kb on - strandat 2907.455 kb on - strandat 2907.482 kb on - strandat 2907.487 kb on + strandat 2907.523 kb on + strandat 2907.523 kb on + strandat 2907.531 kb on - strandat 2907.613 kb on + strand, within CCNA_02745at 2907.701 kb on - strand, within CCNA_02745at 2907.728 kb on - strand, within CCNA_02745at 2907.743 kb on - strand, within CCNA_02745at 2907.780 kb on - strand, within CCNA_02745at 2907.780 kb on - strand, within CCNA_02745at 2907.803 kb on - strand, within CCNA_02745at 2907.839 kb on + strand, within CCNA_02745at 2907.860 kb on + strand, within CCNA_02745at 2907.862 kb on + strand, within CCNA_02745at 2907.862 kb on + strand, within CCNA_02745at 2907.868 kb on - strand, within CCNA_02745at 2907.917 kb on - strand, within CCNA_02745at 2907.918 kb on - strand, within CCNA_02745at 2907.962 kb on + strand, within CCNA_02745at 2907.983 kb on - strand, within CCNA_02745at 2908.178 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,905,473 + CCNA_02743 0.66 -1.2
2,905,480 - CCNA_02743 0.66 -0.4
2,905,481 - CCNA_02743 0.66 -0.5
2,905,506 - CCNA_02743 0.67 -0.9
2,905,508 - CCNA_02743 0.67 +1.2
2,905,522 - CCNA_02743 0.68 -1.6
2,905,548 + CCNA_02743 0.69 +1.1
2,905,563 - CCNA_02743 0.70 +2.3
2,905,583 + CCNA_02743 0.70 -0.2
2,905,584 - CCNA_02743 0.70 +3.0
2,905,652 + CCNA_02743 0.73 +1.6
2,905,657 + CCNA_02743 0.74 -0.8
2,905,660 - CCNA_02743 0.74 +0.5
2,905,665 - CCNA_02743 0.74 +0.1
2,905,670 - CCNA_02743 0.74 +0.5
2,905,691 - CCNA_02743 0.75 +0.1
2,905,698 - CCNA_02743 0.75 +0.8
2,905,707 + CCNA_02743 0.76 -1.9
2,905,743 + CCNA_02743 0.77 -1.0
2,905,762 + CCNA_02743 0.78 -0.6
2,905,826 - CCNA_02743 0.81 +0.3
2,905,826 - CCNA_02743 0.81 +0.9
2,905,839 - CCNA_02743 0.81 +0.6
2,905,867 - CCNA_02743 0.82 +0.7
2,905,889 + CCNA_02743 0.83 +3.2
2,905,889 + CCNA_02743 0.83 +0.6
2,905,981 + CCNA_02743 0.87 -1.0
2,906,016 - CCNA_02743 0.88 +2.2
2,906,042 + CCNA_02743 0.89 -0.1
2,906,042 - CCNA_02743 0.89 +0.3
2,906,042 - CCNA_02743 0.89 +1.5
2,906,092 + +1.6
2,906,092 + +2.6
2,906,100 - +1.1
2,906,105 - -1.2
2,906,123 - +0.8
2,906,128 + -0.1
2,906,150 + +1.6
2,906,155 + -0.7
2,906,155 + +2.4
2,906,155 + -0.9
2,906,160 + +0.8
2,906,163 - -1.2
2,906,163 - -0.3
2,906,163 - +3.1
2,906,163 - +1.0
2,906,172 + -2.0
2,906,246 - -0.1
2,906,294 - +0.3
2,906,340 + +1.4
2,906,348 - +2.9
2,906,456 + +1.8
2,906,465 - -0.5
2,906,526 + +0.3
2,906,553 - CCNA_02744 0.12 +0.5
2,906,632 - CCNA_02744 0.23 +1.7
2,906,638 + CCNA_02744 0.24 -0.1
2,906,638 + CCNA_02744 0.24 +0.2
2,906,638 + +2.6
2,906,646 - CCNA_02744 0.25 -0.6
2,906,646 - CCNA_02744 0.25 -1.2
2,906,672 + CCNA_02744 0.29 +2.6
2,906,706 + CCNA_02744 0.33 -0.8
2,906,751 - CCNA_02744 0.40 +1.1
2,906,768 - CCNA_02744 0.42 +0.3
2,906,790 + CCNA_02744 0.45 -0.2
2,906,826 + +0.8
2,906,836 - CCNA_02744 0.52 +1.5
2,906,836 - CCNA_02744 0.52 +0.8
2,906,836 - CCNA_02744 0.52 +1.7
2,906,836 - CCNA_02744 0.52 +2.3
2,906,861 + CCNA_02744 0.55 -2.4
2,906,861 + CCNA_02744 0.55 -0.9
2,906,861 + CCNA_02744 0.55 -1.8
2,906,869 - CCNA_02744 0.56 +0.9
2,906,869 - CCNA_02744 0.56 +0.2
2,906,897 - CCNA_02744 0.60 +2.0
2,906,905 + CCNA_02744 0.61 +3.1
2,906,931 + CCNA_02744 0.65 +0.1
2,906,934 - CCNA_02744 0.65 +1.0
2,906,976 + CCNA_02744 0.71 -0.8
2,906,976 + CCNA_02744 0.71 -0.8
2,906,976 + CCNA_02744 0.71 +1.1
2,906,984 - CCNA_02744 0.72 +1.1
2,906,984 - CCNA_02744 0.72 -0.3
2,906,984 - CCNA_02744 0.72 +0.4
2,906,984 - CCNA_02744 0.72 +0.5
2,906,984 - CCNA_02744 0.72 +0.6
2,907,017 - CCNA_02744 0.77 +1.8
2,907,020 + CCNA_02744 0.77 +0.5
2,907,047 + CCNA_02744 0.81 -0.6
2,907,055 - CCNA_02744 0.82 +0.0
2,907,058 + CCNA_02744 0.83 +1.1
2,907,077 + CCNA_02744 0.85 +1.1
2,907,180 - +0.5
2,907,216 - -0.4
2,907,280 - +0.4
2,907,301 + -1.6
2,907,306 + -0.6
2,907,311 + -0.2
2,907,319 - -0.3
2,907,319 - +0.1
2,907,377 + -1.6
2,907,377 + +0.2
2,907,380 - +0.5
2,907,385 - -0.9
2,907,411 - -1.9
2,907,427 + -0.7
2,907,435 - +0.5
2,907,447 + -2.2
2,907,448 + -1.8
2,907,448 - +0.8
2,907,455 - -1.8
2,907,482 - -1.2
2,907,487 + +0.5
2,907,523 + -1.6
2,907,523 + +0.3
2,907,531 - +2.7
2,907,613 + CCNA_02745 0.11 +0.5
2,907,701 - CCNA_02745 0.25 +1.1
2,907,728 - CCNA_02745 0.29 +0.5
2,907,743 - CCNA_02745 0.31 -0.8
2,907,780 - CCNA_02745 0.37 +0.5
2,907,780 - CCNA_02745 0.37 +2.1
2,907,803 - CCNA_02745 0.41 +0.7
2,907,839 + CCNA_02745 0.46 -0.5
2,907,860 + CCNA_02745 0.50 +0.7
2,907,862 + CCNA_02745 0.50 +0.9
2,907,862 + CCNA_02745 0.50 +0.7
2,907,868 - CCNA_02745 0.51 -0.6
2,907,917 - CCNA_02745 0.58 -1.0
2,907,918 - CCNA_02745 0.59 +0.8
2,907,962 + CCNA_02745 0.65 -0.0
2,907,983 - CCNA_02745 0.69 -0.5
2,908,178 + -1.5

Or see this region's nucleotide sequence