Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02283 and CCNA_02284 are separated by 162 nucleotides CCNA_02284 and CCNA_02285 are separated by 51 nucleotides CCNA_02285 and CCNA_02286 are separated by 177 nucleotides CCNA_02286 and CCNA_02287 are separated by 167 nucleotides
CCNA_02283: CCNA_02283 - HNH endonuclease family protein, at 2,433,397 to 2,433,960
_02283
CCNA_02284: CCNA_02284 - DNA-3-methyladenine glycosylase II, at 2,434,123 to 2,434,764
_02284
CCNA_02285: CCNA_02285 - transcription elongation factor GreB, at 2,434,816 to 2,435,298
_02285
CCNA_02286: CCNA_02286 - hypothetical protein, at 2,435,476 to 2,435,586
_02286
CCNA_02287: CCNA_02287 - TetR-family transcriptional regulator, at 2,435,754 to 2,436,383
_02287
Position (kb)
2434
2435
2436 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2433.819 kb on - strand, within CCNA_02283 at 2433.852 kb on + strand, within CCNA_02283 at 2433.852 kb on + strand, within CCNA_02283 at 2433.860 kb on - strand, within CCNA_02283 at 2433.862 kb on + strand, within CCNA_02283 at 2433.930 kb on - strand at 2433.930 kb on - strand at 2433.943 kb on + strand at 2433.952 kb on - strand at 2433.954 kb on + strand at 2433.954 kb on + strand at 2434.004 kb on + strand at 2434.017 kb on - strand at 2434.152 kb on - strand at 2434.166 kb on + strand at 2434.171 kb on + strand at 2434.174 kb on - strand at 2434.174 kb on - strand at 2434.227 kb on - strand, within CCNA_02284 at 2434.246 kb on + strand, within CCNA_02284 at 2434.246 kb on + strand, within CCNA_02284 at 2434.254 kb on - strand, within CCNA_02284 at 2434.254 kb on - strand, within CCNA_02284 at 2434.270 kb on - strand, within CCNA_02284 at 2434.282 kb on - strand, within CCNA_02284 at 2434.317 kb on + strand, within CCNA_02284 at 2434.322 kb on + strand, within CCNA_02284 at 2434.339 kb on + strand, within CCNA_02284 at 2434.339 kb on + strand, within CCNA_02284 at 2434.375 kb on + strand, within CCNA_02284 at 2434.383 kb on - strand, within CCNA_02284 at 2434.385 kb on + strand, within CCNA_02284 at 2434.455 kb on - strand, within CCNA_02284 at 2434.485 kb on - strand, within CCNA_02284 at 2434.491 kb on + strand, within CCNA_02284 at 2434.562 kb on - strand, within CCNA_02284 at 2434.595 kb on + strand, within CCNA_02284 at 2434.628 kb on + strand, within CCNA_02284 at 2434.642 kb on + strand, within CCNA_02284 at 2434.650 kb on - strand, within CCNA_02284 at 2434.674 kb on - strand, within CCNA_02284 at 2434.704 kb on - strand at 2434.714 kb on - strand at 2434.797 kb on - strand at 2434.807 kb on - strand at 2434.887 kb on + strand, within CCNA_02285 at 2434.887 kb on - strand, within CCNA_02285 at 2434.907 kb on + strand, within CCNA_02285 at 2434.907 kb on + strand, within CCNA_02285 at 2434.915 kb on - strand, within CCNA_02285 at 2434.917 kb on - strand, within CCNA_02285 at 2434.936 kb on + strand, within CCNA_02285 at 2434.936 kb on + strand, within CCNA_02285 at 2434.944 kb on - strand, within CCNA_02285 at 2434.944 kb on - strand, within CCNA_02285 at 2434.945 kb on - strand, within CCNA_02285 at 2434.972 kb on - strand, within CCNA_02285 at 2434.972 kb on - strand, within CCNA_02285 at 2434.993 kb on + strand, within CCNA_02285 at 2435.019 kb on - strand, within CCNA_02285 at 2435.021 kb on + strand, within CCNA_02285 at 2435.036 kb on + strand, within CCNA_02285 at 2435.077 kb on - strand, within CCNA_02285 at 2435.077 kb on - strand, within CCNA_02285 at 2435.098 kb on + strand, within CCNA_02285 at 2435.098 kb on + strand, within CCNA_02285 at 2435.098 kb on + strand, within CCNA_02285 at 2435.106 kb on - strand, within CCNA_02285 at 2435.106 kb on - strand, within CCNA_02285 at 2435.106 kb on - strand, within CCNA_02285 at 2435.137 kb on + strand, within CCNA_02285 at 2435.149 kb on + strand, within CCNA_02285 at 2435.157 kb on - strand, within CCNA_02285 at 2435.204 kb on + strand, within CCNA_02285 at 2435.281 kb on + strand at 2435.338 kb on + strand at 2435.346 kb on - strand at 2435.351 kb on - strand at 2435.361 kb on - strand at 2435.370 kb on - strand at 2435.403 kb on + strand at 2435.403 kb on + strand at 2435.411 kb on - strand at 2435.440 kb on + strand at 2435.440 kb on + strand at 2435.448 kb on - strand at 2435.448 kb on - strand at 2435.496 kb on - strand, within CCNA_02286 at 2435.509 kb on + strand, within CCNA_02286 at 2435.620 kb on + strand at 2435.621 kb on + strand at 2435.630 kb on - strand at 2435.662 kb on - strand at 2435.751 kb on - strand at 2435.751 kb on - strand at 2435.769 kb on + strand at 2435.774 kb on + strand at 2435.782 kb on + strand at 2435.790 kb on - strand at 2435.790 kb on - strand at 2435.796 kb on + strand at 2435.796 kb on + strand at 2435.796 kb on + strand at 2435.804 kb on - strand at 2435.813 kb on + strand at 2435.894 kb on + strand, within CCNA_02287 at 2435.932 kb on - strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2435.939 kb on + strand, within CCNA_02287 at 2435.947 kb on - strand, within CCNA_02287 at 2435.969 kb on - strand, within CCNA_02287 at 2436.045 kb on + strand, within CCNA_02287 at 2436.053 kb on - strand, within CCNA_02287 at 2436.053 kb on - strand, within CCNA_02287 at 2436.078 kb on - strand, within CCNA_02287 at 2436.090 kb on + strand, within CCNA_02287 at 2436.090 kb on + strand, within CCNA_02287 at 2436.090 kb on + strand, within CCNA_02287 at 2436.090 kb on + strand, within CCNA_02287 at 2436.098 kb on - strand, within CCNA_02287 at 2436.098 kb on - strand, within CCNA_02287 at 2436.098 kb on - strand, within CCNA_02287 at 2436.098 kb on - strand, within CCNA_02287 at 2436.120 kb on - strand, within CCNA_02287 at 2436.124 kb on - strand, within CCNA_02287 at 2436.131 kb on + strand, within CCNA_02287 at 2436.131 kb on + strand, within CCNA_02287 at 2436.131 kb on + strand, within CCNA_02287 at 2436.131 kb on + strand, within CCNA_02287 at 2436.140 kb on + strand, within CCNA_02287 at 2436.147 kb on + strand, within CCNA_02287 at 2436.174 kb on + strand, within CCNA_02287 at 2436.208 kb on + strand, within CCNA_02287 at 2436.215 kb on - strand, within CCNA_02287 at 2436.244 kb on + strand, within CCNA_02287 at 2436.249 kb on + strand, within CCNA_02287 at 2436.276 kb on - strand, within CCNA_02287 at 2436.276 kb on - strand, within CCNA_02287 at 2436.287 kb on + strand, within CCNA_02287
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,433,819 - CCNA_02283 0.75 +0.4 2,433,852 + CCNA_02283 0.81 -2.2 2,433,852 + CCNA_02283 0.81 -0.5 2,433,860 - CCNA_02283 0.82 -0.2 2,433,862 + CCNA_02283 0.82 -2.5 2,433,930 - -2.2 2,433,930 - -2.0 2,433,943 + +0.3 2,433,952 - -0.3 2,433,954 + +0.3 2,433,954 + +1.3 2,434,004 + -2.2 2,434,017 - +0.2 2,434,152 - +0.9 2,434,166 + +2.3 2,434,171 + +0.2 2,434,174 - -1.4 2,434,174 - -0.4 2,434,227 - CCNA_02284 0.16 +1.9 2,434,246 + CCNA_02284 0.19 -0.3 2,434,246 + CCNA_02284 0.19 +0.9 2,434,254 - CCNA_02284 0.20 -1.0 2,434,254 - CCNA_02284 0.20 -0.2 2,434,270 - CCNA_02284 0.23 -2.8 2,434,282 - CCNA_02284 0.25 +0.1 2,434,317 + CCNA_02284 0.30 -0.9 2,434,322 + CCNA_02284 0.31 -0.6 2,434,339 + CCNA_02284 0.34 +0.1 2,434,339 + CCNA_02284 0.34 -0.6 2,434,375 + CCNA_02284 0.39 -1.0 2,434,383 - CCNA_02284 0.40 -1.9 2,434,385 + CCNA_02284 0.41 -1.7 2,434,455 - CCNA_02284 0.52 -0.5 2,434,485 - CCNA_02284 0.56 +0.8 2,434,491 + CCNA_02284 0.57 -0.8 2,434,562 - CCNA_02284 0.68 -0.4 2,434,595 + CCNA_02284 0.74 -1.7 2,434,628 + CCNA_02284 0.79 -1.1 2,434,642 + CCNA_02284 0.81 -1.5 2,434,650 - CCNA_02284 0.82 +0.3 2,434,674 - CCNA_02284 0.86 +0.3 2,434,704 - -0.4 2,434,714 - +0.3 2,434,797 - +0.5 2,434,807 - -0.4 2,434,887 + CCNA_02285 0.15 -1.1 2,434,887 - CCNA_02285 0.15 -0.6 2,434,907 + CCNA_02285 0.19 +0.6 2,434,907 + CCNA_02285 0.19 -0.1 2,434,915 - CCNA_02285 0.20 +1.4 2,434,917 - CCNA_02285 0.21 +1.1 2,434,936 + CCNA_02285 0.25 -0.3 2,434,936 + CCNA_02285 0.25 -2.1 2,434,944 - CCNA_02285 0.27 +1.1 2,434,944 - CCNA_02285 0.27 +1.3 2,434,945 - CCNA_02285 0.27 +0.2 2,434,972 - CCNA_02285 0.32 +0.2 2,434,972 - CCNA_02285 0.32 +0.5 2,434,993 + CCNA_02285 0.37 -2.4 2,435,019 - CCNA_02285 0.42 +0.1 2,435,021 + CCNA_02285 0.42 -1.0 2,435,036 + CCNA_02285 0.46 +1.7 2,435,077 - CCNA_02285 0.54 -1.2 2,435,077 - CCNA_02285 0.54 +0.8 2,435,098 + CCNA_02285 0.58 -0.3 2,435,098 + CCNA_02285 0.58 -0.6 2,435,098 + CCNA_02285 0.58 -0.5 2,435,106 - CCNA_02285 0.60 +3.6 2,435,106 - CCNA_02285 0.60 +0.4 2,435,106 - CCNA_02285 0.60 +1.7 2,435,137 + CCNA_02285 0.66 +3.3 2,435,149 + CCNA_02285 0.69 +1.1 2,435,157 - CCNA_02285 0.71 +0.4 2,435,204 + CCNA_02285 0.80 +0.1 2,435,281 + +1.1 2,435,338 + -0.2 2,435,346 - +2.4 2,435,351 - +0.5 2,435,361 - +1.3 2,435,370 - +2.3 2,435,403 + -1.2 2,435,403 + -0.5 2,435,411 - -1.1 2,435,440 + +1.7 2,435,440 + +0.3 2,435,448 - +0.3 2,435,448 - +0.5 2,435,496 - CCNA_02286 0.18 -2.0 2,435,509 + CCNA_02286 0.30 -1.4 2,435,620 + +1.1 2,435,621 + -0.4 2,435,630 - -0.4 2,435,662 - +0.5 2,435,751 - -2.1 2,435,751 - -0.6 2,435,769 + -0.4 2,435,774 + -0.5 2,435,782 + +1.4 2,435,790 - -1.7 2,435,790 - -0.2 2,435,796 + +1.0 2,435,796 + +0.1 2,435,796 + +1.0 2,435,804 - -1.6 2,435,813 + +1.3 2,435,894 + CCNA_02287 0.22 +0.7 2,435,932 - CCNA_02287 0.28 -1.0 2,435,939 + CCNA_02287 0.29 +2.9 2,435,939 + CCNA_02287 0.29 +3.4 2,435,939 + CCNA_02287 0.29 +1.5 2,435,939 + CCNA_02287 0.29 +1.5 2,435,939 + CCNA_02287 0.29 +4.3 2,435,939 + CCNA_02287 0.29 +1.1 2,435,947 - CCNA_02287 0.31 +1.3 2,435,969 - CCNA_02287 0.34 +1.7 2,436,045 + CCNA_02287 0.46 +1.5 2,436,053 - CCNA_02287 0.47 -0.2 2,436,053 - CCNA_02287 0.47 -1.1 2,436,078 - CCNA_02287 0.51 -0.6 2,436,090 + CCNA_02287 0.53 +2.2 2,436,090 + CCNA_02287 0.53 +0.4 2,436,090 + CCNA_02287 0.53 +0.8 2,436,090 + CCNA_02287 0.53 +0.9 2,436,098 - CCNA_02287 0.55 -1.6 2,436,098 - CCNA_02287 0.55 +0.0 2,436,098 - CCNA_02287 0.55 +0.3 2,436,098 - CCNA_02287 0.55 -0.8 2,436,120 - CCNA_02287 0.58 -0.7 2,436,124 - CCNA_02287 0.59 +0.1 2,436,131 + CCNA_02287 0.60 +1.1 2,436,131 + CCNA_02287 0.60 +1.7 2,436,131 + CCNA_02287 0.60 +2.9 2,436,131 + CCNA_02287 0.60 +1.3 2,436,140 + CCNA_02287 0.61 +0.7 2,436,147 + CCNA_02287 0.62 +1.5 2,436,174 + CCNA_02287 0.67 +1.7 2,436,208 + CCNA_02287 0.72 +0.9 2,436,215 - CCNA_02287 0.73 +1.1 2,436,244 + CCNA_02287 0.78 +1.8 2,436,249 + CCNA_02287 0.79 +1.9 2,436,276 - CCNA_02287 0.83 -2.5 2,436,276 - CCNA_02287 0.83 +0.7 2,436,287 + CCNA_02287 0.85 +2.0
Or see this region's nucleotide sequence