Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02180 and CCNA_02181 are separated by 87 nucleotides CCNA_02181 and CCNA_02182 overlap by 4 nucleotides CCNA_02182 and CCNA_02183 overlap by 20 nucleotides CCNA_02183 and CCNA_02184 overlap by 4 nucleotides
CCNA_02180: CCNA_02180 - iron-sulfur cluster assembly/repair protein ApbC, at 2,331,553 to 2,332,653
_02180
CCNA_02181: CCNA_02181 - phosphatase/phosphohexomutase family protein, at 2,332,741 to 2,333,406
_02181
CCNA_02182: CCNA_02182 - phosphoserine phosphatase, at 2,333,403 to 2,334,281
_02182
CCNA_02183: CCNA_02183 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 2,334,262 to 2,335,152
_02183
CCNA_02184: CCNA_02184 - competence damage-inducible protein cinA, at 2,335,149 to 2,335,619
_02184
Position (kb)
2333
2334
2335 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2332.435 kb on - strand, within CCNA_02180 at 2332.504 kb on - strand, within CCNA_02180 at 2332.574 kb on + strand at 2332.574 kb on + strand at 2332.676 kb on - strand at 2332.710 kb on + strand at 2332.710 kb on + strand at 2332.718 kb on - strand at 2332.718 kb on - strand at 2332.718 kb on - strand at 2332.751 kb on + strand at 2332.752 kb on - strand at 2332.752 kb on - strand at 2332.752 kb on - strand at 2332.774 kb on + strand at 2332.800 kb on - strand at 2332.832 kb on - strand, within CCNA_02181 at 2332.842 kb on + strand, within CCNA_02181 at 2332.859 kb on - strand, within CCNA_02181 at 2332.964 kb on - strand, within CCNA_02181 at 2332.969 kb on - strand, within CCNA_02181 at 2332.982 kb on + strand, within CCNA_02181 at 2333.001 kb on + strand, within CCNA_02181 at 2333.003 kb on + strand, within CCNA_02181 at 2333.009 kb on - strand, within CCNA_02181 at 2333.022 kb on + strand, within CCNA_02181 at 2333.022 kb on + strand, within CCNA_02181 at 2333.030 kb on - strand, within CCNA_02181 at 2333.049 kb on - strand, within CCNA_02181 at 2333.070 kb on + strand, within CCNA_02181 at 2333.078 kb on - strand, within CCNA_02181 at 2333.080 kb on + strand, within CCNA_02181 at 2333.107 kb on - strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.199 kb on - strand, within CCNA_02181 at 2333.278 kb on - strand, within CCNA_02181 at 2333.292 kb on - strand, within CCNA_02181 at 2333.310 kb on - strand, within CCNA_02181 at 2333.325 kb on - strand, within CCNA_02181 at 2333.376 kb on - strand at 2333.422 kb on + strand at 2333.440 kb on - strand at 2333.445 kb on - strand at 2333.451 kb on + strand at 2333.470 kb on + strand at 2333.484 kb on - strand at 2333.523 kb on - strand, within CCNA_02182 at 2333.571 kb on + strand, within CCNA_02182 at 2333.602 kb on - strand, within CCNA_02182 at 2333.602 kb on - strand, within CCNA_02182 at 2333.602 kb on - strand, within CCNA_02182 at 2333.651 kb on - strand, within CCNA_02182 at 2333.675 kb on + strand, within CCNA_02182 at 2333.677 kb on + strand, within CCNA_02182 at 2333.678 kb on - strand, within CCNA_02182 at 2333.707 kb on + strand, within CCNA_02182 at 2333.717 kb on - strand, within CCNA_02182 at 2333.717 kb on - strand, within CCNA_02182 at 2333.717 kb on - strand, within CCNA_02182 at 2333.805 kb on - strand, within CCNA_02182 at 2333.835 kb on - strand, within CCNA_02182 at 2333.840 kb on - strand, within CCNA_02182 at 2333.922 kb on + strand, within CCNA_02182 at 2333.924 kb on - strand, within CCNA_02182 at 2333.935 kb on + strand, within CCNA_02182 at 2333.961 kb on + strand, within CCNA_02182 at 2333.964 kb on - strand, within CCNA_02182 at 2333.977 kb on - strand, within CCNA_02182 at 2334.018 kb on - strand, within CCNA_02182 at 2334.033 kb on - strand, within CCNA_02182 at 2334.042 kb on + strand, within CCNA_02182 at 2334.092 kb on - strand, within CCNA_02182 at 2334.162 kb on + strand, within CCNA_02182 at 2334.162 kb on + strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.191 kb on - strand, within CCNA_02182 at 2334.223 kb on + strand at 2334.270 kb on - strand at 2334.270 kb on - strand at 2335.134 kb on + strand at 2335.157 kb on + strand at 2335.176 kb on + strand at 2335.178 kb on + strand at 2335.178 kb on + strand at 2335.186 kb on - strand at 2335.186 kb on - strand at 2335.186 kb on - strand at 2335.186 kb on - strand at 2335.222 kb on - strand, within CCNA_02184 at 2335.242 kb on + strand, within CCNA_02184 at 2335.247 kb on + strand, within CCNA_02184
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,332,435 - CCNA_02180 0.80 -0.2 2,332,504 - CCNA_02180 0.86 +1.5 2,332,574 + +0.0 2,332,574 + -0.9 2,332,676 - +1.3 2,332,710 + -2.6 2,332,710 + -0.1 2,332,718 - -0.1 2,332,718 - +1.2 2,332,718 - +0.5 2,332,751 + -0.7 2,332,752 - -0.4 2,332,752 - +1.6 2,332,752 - -0.1 2,332,774 + +0.2 2,332,800 - -0.2 2,332,832 - CCNA_02181 0.14 -0.9 2,332,842 + CCNA_02181 0.15 +0.7 2,332,859 - CCNA_02181 0.18 +1.3 2,332,964 - CCNA_02181 0.33 -0.9 2,332,969 - CCNA_02181 0.34 -0.9 2,332,982 + CCNA_02181 0.36 +1.1 2,333,001 + CCNA_02181 0.39 -1.7 2,333,003 + CCNA_02181 0.39 -0.3 2,333,009 - CCNA_02181 0.40 -0.4 2,333,022 + CCNA_02181 0.42 +0.4 2,333,022 + CCNA_02181 0.42 -0.7 2,333,030 - CCNA_02181 0.43 -0.5 2,333,049 - CCNA_02181 0.46 +0.9 2,333,070 + CCNA_02181 0.49 -2.1 2,333,078 - CCNA_02181 0.51 -0.6 2,333,080 + CCNA_02181 0.51 -1.5 2,333,107 - CCNA_02181 0.55 +0.7 2,333,171 + CCNA_02181 0.65 -0.5 2,333,171 + CCNA_02181 0.65 -0.2 2,333,171 + CCNA_02181 0.65 -1.2 2,333,171 + CCNA_02181 0.65 +0.4 2,333,171 + CCNA_02181 0.65 +0.9 2,333,171 + CCNA_02181 0.65 -2.4 2,333,171 + CCNA_02181 0.65 -0.8 2,333,179 - CCNA_02181 0.66 -0.8 2,333,179 - CCNA_02181 0.66 -0.6 2,333,179 - CCNA_02181 0.66 -0.4 2,333,179 - CCNA_02181 0.66 -0.0 2,333,179 - CCNA_02181 0.66 -1.2 2,333,179 - CCNA_02181 0.66 +0.3 2,333,179 - CCNA_02181 0.66 -0.4 2,333,199 - CCNA_02181 0.69 +0.2 2,333,278 - CCNA_02181 0.81 +2.0 2,333,292 - CCNA_02181 0.83 +1.7 2,333,310 - CCNA_02181 0.85 +1.0 2,333,325 - CCNA_02181 0.88 +1.5 2,333,376 - +1.9 2,333,422 + -1.2 2,333,440 - -3.0 2,333,445 - -0.7 2,333,451 + +0.2 2,333,470 + +1.2 2,333,484 - -1.1 2,333,523 - CCNA_02182 0.14 +0.6 2,333,571 + CCNA_02182 0.19 -1.5 2,333,602 - CCNA_02182 0.23 -0.6 2,333,602 - CCNA_02182 0.23 -1.4 2,333,602 - CCNA_02182 0.23 -1.0 2,333,651 - CCNA_02182 0.28 -3.0 2,333,675 + CCNA_02182 0.31 -0.5 2,333,677 + CCNA_02182 0.31 -2.1 2,333,678 - CCNA_02182 0.31 -0.9 2,333,707 + CCNA_02182 0.35 -1.5 2,333,717 - CCNA_02182 0.36 -2.8 2,333,717 - CCNA_02182 0.36 +0.4 2,333,717 - CCNA_02182 0.36 -2.4 2,333,805 - CCNA_02182 0.46 -2.9 2,333,835 - CCNA_02182 0.49 -1.2 2,333,840 - CCNA_02182 0.50 -0.4 2,333,922 + CCNA_02182 0.59 -0.1 2,333,924 - CCNA_02182 0.59 -2.4 2,333,935 + CCNA_02182 0.61 -1.2 2,333,961 + CCNA_02182 0.63 -1.2 2,333,964 - CCNA_02182 0.64 -2.5 2,333,977 - CCNA_02182 0.65 -0.2 2,334,018 - CCNA_02182 0.70 -0.3 2,334,033 - CCNA_02182 0.72 -4.0 2,334,042 + CCNA_02182 0.73 -1.6 2,334,092 - CCNA_02182 0.78 -0.7 2,334,162 + CCNA_02182 0.86 -0.9 2,334,162 + CCNA_02182 0.86 +1.5 2,334,170 - CCNA_02182 0.87 -0.2 2,334,191 - CCNA_02182 0.90 -1.6 2,334,223 + -2.3 2,334,270 - -0.2 2,334,270 - +0.6 2,335,134 + +0.3 2,335,157 + +1.2 2,335,176 + -2.1 2,335,178 + -0.0 2,335,178 + +0.4 2,335,186 - -1.9 2,335,186 - -1.4 2,335,186 - -1.2 2,335,186 - +1.1 2,335,222 - CCNA_02184 0.15 -0.4 2,335,242 + CCNA_02184 0.20 +0.3 2,335,247 + CCNA_02184 0.21 +0.8
Or see this region's nucleotide sequence