Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24065 and CA265_RS24070 are separated by 134 nucleotides CA265_RS24070 and CA265_RS24075 are separated by 133 nucleotides CA265_RS24075 and CA265_RS24080 are separated by 222 nucleotides CA265_RS24080 and CA265_RS24085 are separated by 9 nucleotides
CA265_RS24065: CA265_RS24065 - hypothetical protein, at 5,862,544 to 5,863,869
_RS24065
CA265_RS24070: CA265_RS24070 - hypothetical protein, at 5,864,004 to 5,864,711
_RS24070
CA265_RS24075: CA265_RS24075 - hypothetical protein, at 5,864,845 to 5,865,687
_RS24075
CA265_RS24080: CA265_RS24080 - DinB superfamily protein, at 5,865,910 to 5,866,362
_RS24080
CA265_RS24085: CA265_RS24085 - hypothetical protein, at 5,866,372 to 5,867,130
_RS24085
Position (kb) 5864
5865
5866 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5863.893 kb on + strand at 5863.907 kb on + strand at 5863.919 kb on + strand at 5864.003 kb on + strand at 5864.018 kb on - strand at 5864.061 kb on + strand at 5864.137 kb on + strand, within CA265_RS24070 at 5864.179 kb on - strand, within CA265_RS24070 at 5864.189 kb on + strand, within CA265_RS24070 at 5864.189 kb on + strand, within CA265_RS24070 at 5864.195 kb on - strand, within CA265_RS24070 at 5864.215 kb on - strand, within CA265_RS24070 at 5864.215 kb on - strand, within CA265_RS24070 at 5864.225 kb on + strand, within CA265_RS24070 at 5864.226 kb on - strand, within CA265_RS24070 at 5864.255 kb on - strand, within CA265_RS24070 at 5864.285 kb on - strand, within CA265_RS24070 at 5864.328 kb on + strand, within CA265_RS24070 at 5864.329 kb on - strand, within CA265_RS24070 at 5864.329 kb on - strand, within CA265_RS24070 at 5864.330 kb on + strand, within CA265_RS24070 at 5864.330 kb on + strand, within CA265_RS24070 at 5864.331 kb on - strand, within CA265_RS24070 at 5864.500 kb on + strand, within CA265_RS24070 at 5864.501 kb on - strand, within CA265_RS24070 at 5864.633 kb on + strand, within CA265_RS24070 at 5864.667 kb on - strand at 5864.908 kb on - strand at 5864.920 kb on - strand at 5864.965 kb on + strand, within CA265_RS24075 at 5864.966 kb on - strand, within CA265_RS24075 at 5865.053 kb on + strand, within CA265_RS24075 at 5865.101 kb on + strand, within CA265_RS24075 at 5865.110 kb on - strand, within CA265_RS24075 at 5865.111 kb on + strand, within CA265_RS24075 at 5865.112 kb on - strand, within CA265_RS24075 at 5865.145 kb on + strand, within CA265_RS24075 at 5865.146 kb on - strand, within CA265_RS24075 at 5865.150 kb on + strand, within CA265_RS24075 at 5865.151 kb on - strand, within CA265_RS24075 at 5865.156 kb on + strand at 5865.220 kb on - strand, within CA265_RS24075 at 5865.232 kb on - strand, within CA265_RS24075 at 5865.253 kb on - strand, within CA265_RS24075 at 5865.253 kb on - strand, within CA265_RS24075 at 5865.264 kb on - strand, within CA265_RS24075 at 5865.276 kb on + strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.313 kb on - strand, within CA265_RS24075 at 5865.337 kb on - strand, within CA265_RS24075 at 5865.341 kb on - strand, within CA265_RS24075 at 5865.365 kb on - strand, within CA265_RS24075 at 5865.372 kb on + strand, within CA265_RS24075 at 5865.396 kb on + strand, within CA265_RS24075 at 5865.528 kb on + strand, within CA265_RS24075 at 5865.570 kb on + strand, within CA265_RS24075 at 5865.571 kb on - strand, within CA265_RS24075 at 5865.590 kb on + strand, within CA265_RS24075 at 5865.604 kb on - strand at 5865.650 kb on - strand at 5865.663 kb on - strand at 5865.803 kb on - strand at 5865.833 kb on + strand at 5865.833 kb on + strand at 5865.833 kb on + strand at 5865.835 kb on + strand at 5865.872 kb on + strand at 5865.872 kb on + strand at 5865.878 kb on - strand at 5865.926 kb on - strand at 5865.937 kb on - strand at 5865.937 kb on - strand at 5865.942 kb on - strand at 5865.945 kb on + strand at 5865.967 kb on + strand, within CA265_RS24080 at 5865.967 kb on + strand, within CA265_RS24080 at 5865.968 kb on - strand, within CA265_RS24080 at 5866.041 kb on + strand, within CA265_RS24080 at 5866.041 kb on + strand, within CA265_RS24080 at 5866.060 kb on + strand, within CA265_RS24080 at 5866.060 kb on + strand, within CA265_RS24080 at 5866.084 kb on + strand, within CA265_RS24080 at 5866.084 kb on + strand, within CA265_RS24080 at 5866.085 kb on - strand, within CA265_RS24080 at 5866.121 kb on - strand, within CA265_RS24080 at 5866.197 kb on + strand, within CA265_RS24080 at 5866.198 kb on - strand, within CA265_RS24080 at 5866.200 kb on - strand, within CA265_RS24080 at 5866.264 kb on + strand, within CA265_RS24080 at 5866.279 kb on - strand, within CA265_RS24080 at 5866.295 kb on - strand, within CA265_RS24080 at 5866.321 kb on - strand at 5866.362 kb on + strand at 5866.362 kb on + strand at 5866.362 kb on + strand at 5866.414 kb on - strand at 5866.432 kb on + strand at 5866.433 kb on - strand at 5866.441 kb on + strand at 5866.450 kb on - strand, within CA265_RS24085 at 5866.479 kb on + strand, within CA265_RS24085 at 5866.480 kb on - strand, within CA265_RS24085 at 5866.487 kb on + strand, within CA265_RS24085 at 5866.487 kb on + strand, within CA265_RS24085 at 5866.491 kb on + strand, within CA265_RS24085 at 5866.541 kb on + strand, within CA265_RS24085 at 5866.556 kb on - strand, within CA265_RS24085 at 5866.643 kb on - strand, within CA265_RS24085 at 5866.649 kb on + strand, within CA265_RS24085 at 5866.683 kb on - strand, within CA265_RS24085
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,863,893 + +0.1 5,863,907 + -0.3 5,863,919 + -0.1 5,864,003 + +0.4 5,864,018 - -0.7 5,864,061 + -0.2 5,864,137 + CA265_RS24070 0.19 -0.6 5,864,179 - CA265_RS24070 0.25 +0.7 5,864,189 + CA265_RS24070 0.26 +0.4 5,864,189 + CA265_RS24070 0.26 +0.4 5,864,195 - CA265_RS24070 0.27 -0.1 5,864,215 - CA265_RS24070 0.30 -0.1 5,864,215 - CA265_RS24070 0.30 -0.4 5,864,225 + CA265_RS24070 0.31 -0.6 5,864,226 - CA265_RS24070 0.31 +0.6 5,864,255 - CA265_RS24070 0.35 -0.2 5,864,285 - CA265_RS24070 0.40 +0.5 5,864,328 + CA265_RS24070 0.46 -1.5 5,864,329 - CA265_RS24070 0.46 -0.6 5,864,329 - CA265_RS24070 0.46 +0.1 5,864,330 + CA265_RS24070 0.46 -0.1 5,864,330 + CA265_RS24070 0.46 +0.1 5,864,331 - CA265_RS24070 0.46 +0.5 5,864,500 + CA265_RS24070 0.70 -0.5 5,864,501 - CA265_RS24070 0.70 +1.6 5,864,633 + CA265_RS24070 0.89 -0.8 5,864,667 - -0.3 5,864,908 - +0.9 5,864,920 - +1.5 5,864,965 + CA265_RS24075 0.14 +0.6 5,864,966 - CA265_RS24075 0.14 +0.6 5,865,053 + CA265_RS24075 0.25 +1.0 5,865,101 + CA265_RS24075 0.30 +0.8 5,865,110 - CA265_RS24075 0.31 +0.9 5,865,111 + CA265_RS24075 0.32 -1.0 5,865,112 - CA265_RS24075 0.32 +1.1 5,865,145 + CA265_RS24075 0.36 +0.3 5,865,146 - CA265_RS24075 0.36 +0.8 5,865,150 + CA265_RS24075 0.36 +0.8 5,865,151 - CA265_RS24075 0.36 +1.0 5,865,156 + +2.8 5,865,220 - CA265_RS24075 0.44 +0.2 5,865,232 - CA265_RS24075 0.46 +1.4 5,865,253 - CA265_RS24075 0.48 +0.6 5,865,253 - CA265_RS24075 0.48 +1.1 5,865,264 - CA265_RS24075 0.50 +1.3 5,865,276 + CA265_RS24075 0.51 +0.5 5,865,313 - CA265_RS24075 0.56 +0.2 5,865,313 - CA265_RS24075 0.56 +0.6 5,865,313 - CA265_RS24075 0.56 +0.7 5,865,313 - CA265_RS24075 0.56 +0.4 5,865,337 - CA265_RS24075 0.58 +1.5 5,865,341 - CA265_RS24075 0.59 +0.2 5,865,365 - CA265_RS24075 0.62 -0.2 5,865,372 + CA265_RS24075 0.63 -0.7 5,865,396 + CA265_RS24075 0.65 +1.0 5,865,528 + CA265_RS24075 0.81 +1.3 5,865,570 + CA265_RS24075 0.86 +3.4 5,865,571 - CA265_RS24075 0.86 +1.9 5,865,590 + CA265_RS24075 0.88 +0.9 5,865,604 - +1.0 5,865,650 - +1.3 5,865,663 - +1.3 5,865,803 - +0.9 5,865,833 + -1.1 5,865,833 + +0.7 5,865,833 + -0.4 5,865,835 + -0.9 5,865,872 + -0.3 5,865,872 + -0.1 5,865,878 - -0.2 5,865,926 - -1.1 5,865,937 - +0.8 5,865,937 - +0.2 5,865,942 - -0.1 5,865,945 + +0.2 5,865,967 + CA265_RS24080 0.13 -0.3 5,865,967 + CA265_RS24080 0.13 +1.2 5,865,968 - CA265_RS24080 0.13 +1.2 5,866,041 + CA265_RS24080 0.29 -1.4 5,866,041 + CA265_RS24080 0.29 -0.5 5,866,060 + CA265_RS24080 0.33 -1.0 5,866,060 + CA265_RS24080 0.33 +0.3 5,866,084 + CA265_RS24080 0.38 -2.7 5,866,084 + CA265_RS24080 0.38 +0.9 5,866,085 - CA265_RS24080 0.39 +0.8 5,866,121 - CA265_RS24080 0.47 +0.7 5,866,197 + CA265_RS24080 0.63 -1.1 5,866,198 - CA265_RS24080 0.64 -0.4 5,866,200 - CA265_RS24080 0.64 +0.2 5,866,264 + CA265_RS24080 0.78 -1.4 5,866,279 - CA265_RS24080 0.81 -1.0 5,866,295 - CA265_RS24080 0.85 +0.8 5,866,321 - +0.0 5,866,362 + +0.0 5,866,362 + +0.2 5,866,362 + -0.3 5,866,414 - +0.6 5,866,432 + -0.1 5,866,433 - +0.4 5,866,441 + -2.0 5,866,450 - CA265_RS24085 0.10 -0.1 5,866,479 + CA265_RS24085 0.14 -0.4 5,866,480 - CA265_RS24085 0.14 -0.4 5,866,487 + CA265_RS24085 0.15 -0.7 5,866,487 + CA265_RS24085 0.15 -0.1 5,866,491 + CA265_RS24085 0.16 -0.4 5,866,541 + CA265_RS24085 0.22 +0.0 5,866,556 - CA265_RS24085 0.24 -0.9 5,866,643 - CA265_RS24085 0.36 +0.8 5,866,649 + CA265_RS24085 0.36 -2.8 5,866,683 - CA265_RS24085 0.41 +0.8
Or see this region's nucleotide sequence