Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21680 and CA265_RS21685 are separated by 37 nucleotides CA265_RS21685 and CA265_RS21690 are separated by 75 nucleotides CA265_RS21690 and CA265_RS21695 are separated by 14 nucleotides CA265_RS21695 and CA265_RS21700 are separated by 470 nucleotides
CA265_RS21680: CA265_RS21680 - sigma-54-dependent Fis family transcriptional regulator, at 5,333,689 to 5,334,936
_RS21680
CA265_RS21685: CA265_RS21685 - hypothetical protein, at 5,334,974 to 5,335,486
_RS21685
CA265_RS21690: CA265_RS21690 - hypothetical protein, at 5,335,562 to 5,336,620
_RS21690
CA265_RS21695: CA265_RS21695 - preprotein translocase subunit SecG, at 5,336,635 to 5,336,997
_RS21695
CA265_RS21700: CA265_RS21700 - two-component sensor histidine kinase, at 5,337,468 to 5,338,493
_RS21700
Position (kb) 5335
5336
5337 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5334.955 kb on + strand at 5334.965 kb on + strand at 5335.489 kb on - strand at 5335.627 kb on - strand at 5335.680 kb on + strand, within CA265_RS21690 at 5335.680 kb on + strand, within CA265_RS21690 at 5335.759 kb on - strand, within CA265_RS21690 at 5335.759 kb on - strand, within CA265_RS21690 at 5335.828 kb on + strand, within CA265_RS21690 at 5335.860 kb on + strand, within CA265_RS21690 at 5335.871 kb on - strand, within CA265_RS21690 at 5335.879 kb on + strand, within CA265_RS21690 at 5335.992 kb on + strand, within CA265_RS21690 at 5335.992 kb on + strand, within CA265_RS21690 at 5336.131 kb on + strand, within CA265_RS21690 at 5336.131 kb on + strand, within CA265_RS21690 at 5336.153 kb on - strand, within CA265_RS21690 at 5336.201 kb on - strand, within CA265_RS21690 at 5336.209 kb on + strand, within CA265_RS21690 at 5336.214 kb on + strand, within CA265_RS21690 at 5336.271 kb on - strand, within CA265_RS21690 at 5336.427 kb on + strand, within CA265_RS21690 at 5336.469 kb on - strand, within CA265_RS21690 at 5336.536 kb on + strand at 5336.537 kb on - strand at 5336.537 kb on - strand at 5336.540 kb on + strand at 5336.995 kb on + strand at 5337.002 kb on + strand at 5337.002 kb on + strand at 5337.003 kb on - strand at 5337.017 kb on + strand at 5337.092 kb on + strand at 5337.092 kb on + strand at 5337.092 kb on + strand at 5337.128 kb on - strand at 5337.132 kb on + strand at 5337.174 kb on + strand at 5337.175 kb on - strand at 5337.175 kb on - strand at 5337.245 kb on + strand at 5337.290 kb on + strand at 5337.290 kb on + strand at 5337.339 kb on + strand at 5337.371 kb on - strand at 5337.371 kb on - strand at 5337.375 kb on + strand at 5337.376 kb on - strand at 5337.406 kb on - strand at 5337.448 kb on - strand at 5337.457 kb on + strand at 5337.555 kb on + strand at 5337.558 kb on + strand at 5337.558 kb on + strand at 5337.558 kb on + strand at 5337.558 kb on + strand at 5337.581 kb on - strand, within CA265_RS21700 at 5337.609 kb on + strand, within CA265_RS21700 at 5337.612 kb on + strand, within CA265_RS21700
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,334,955 + -0.1 5,334,965 + -1.2 5,335,489 - -1.3 5,335,627 - -2.3 5,335,680 + CA265_RS21690 0.11 -1.4 5,335,680 + CA265_RS21690 0.11 -1.5 5,335,759 - CA265_RS21690 0.19 -1.0 5,335,759 - CA265_RS21690 0.19 -1.8 5,335,828 + CA265_RS21690 0.25 -0.0 5,335,860 + CA265_RS21690 0.28 +0.9 5,335,871 - CA265_RS21690 0.29 -0.0 5,335,879 + CA265_RS21690 0.30 -0.4 5,335,992 + CA265_RS21690 0.41 -1.8 5,335,992 + CA265_RS21690 0.41 +0.7 5,336,131 + CA265_RS21690 0.54 -0.3 5,336,131 + CA265_RS21690 0.54 -0.8 5,336,153 - CA265_RS21690 0.56 -0.5 5,336,201 - CA265_RS21690 0.60 -1.8 5,336,209 + CA265_RS21690 0.61 +1.9 5,336,214 + CA265_RS21690 0.62 -2.4 5,336,271 - CA265_RS21690 0.67 -0.0 5,336,427 + CA265_RS21690 0.82 -0.9 5,336,469 - CA265_RS21690 0.86 -1.3 5,336,536 + -2.1 5,336,537 - -0.8 5,336,537 - -0.7 5,336,540 + -0.3 5,336,995 + +1.0 5,337,002 + -0.9 5,337,002 + -0.4 5,337,003 - +1.1 5,337,017 + -0.6 5,337,092 + +0.1 5,337,092 + +0.2 5,337,092 + -0.2 5,337,128 - +0.5 5,337,132 + -1.1 5,337,174 + -1.0 5,337,175 - +1.0 5,337,175 - +1.7 5,337,245 + -0.6 5,337,290 + -0.4 5,337,290 + -1.7 5,337,339 + -2.8 5,337,371 - +1.7 5,337,371 - +0.3 5,337,375 + -1.4 5,337,376 - +0.6 5,337,406 - +0.7 5,337,448 - +1.0 5,337,457 + +0.1 5,337,555 + -1.7 5,337,558 + +0.0 5,337,558 + +0.1 5,337,558 + -0.2 5,337,558 + -1.6 5,337,581 - CA265_RS21700 0.11 +0.7 5,337,609 + CA265_RS21700 0.14 +0.4 5,337,612 + CA265_RS21700 0.14 +0.3
Or see this region's nucleotide sequence