Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21545 and CA265_RS21550 are separated by 92 nucleotides CA265_RS21550 and CA265_RS21555 are separated by 213 nucleotides
CA265_RS21545: CA265_RS21545 - hypothetical protein, at 5,304,656 to 5,305,903
_RS21545
CA265_RS21550: CA265_RS21550 - zinc-dependent metalloprotease, at 5,305,996 to 5,308,512
_RS21550
CA265_RS21555: CA265_RS21555 - hypothetical protein, at 5,308,726 to 5,309,601
_RS21555
Position (kb) 5305
5306
5307
5308
5309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5305.008 kb on + strand, within CA265_RS21545 at 5305.009 kb on - strand, within CA265_RS21545 at 5305.016 kb on - strand, within CA265_RS21545 at 5305.016 kb on - strand, within CA265_RS21545 at 5305.025 kb on - strand, within CA265_RS21545 at 5305.030 kb on + strand, within CA265_RS21545 at 5305.032 kb on + strand, within CA265_RS21545 at 5305.033 kb on - strand, within CA265_RS21545 at 5305.189 kb on + strand, within CA265_RS21545 at 5305.193 kb on + strand, within CA265_RS21545 at 5305.193 kb on + strand, within CA265_RS21545 at 5305.213 kb on + strand, within CA265_RS21545 at 5305.213 kb on + strand, within CA265_RS21545 at 5305.239 kb on - strand, within CA265_RS21545 at 5305.241 kb on - strand, within CA265_RS21545 at 5305.241 kb on - strand, within CA265_RS21545 at 5305.393 kb on + strand, within CA265_RS21545 at 5305.393 kb on + strand, within CA265_RS21545 at 5305.408 kb on + strand, within CA265_RS21545 at 5305.416 kb on - strand, within CA265_RS21545 at 5305.428 kb on + strand, within CA265_RS21545 at 5305.511 kb on + strand, within CA265_RS21545 at 5305.549 kb on - strand, within CA265_RS21545 at 5305.573 kb on + strand, within CA265_RS21545 at 5305.592 kb on - strand, within CA265_RS21545 at 5305.639 kb on + strand, within CA265_RS21545 at 5305.711 kb on + strand, within CA265_RS21545 at 5305.734 kb on + strand, within CA265_RS21545 at 5305.735 kb on - strand, within CA265_RS21545 at 5305.776 kb on + strand, within CA265_RS21545 at 5305.777 kb on - strand, within CA265_RS21545 at 5305.784 kb on + strand at 5305.784 kb on + strand at 5305.785 kb on - strand at 5305.786 kb on + strand at 5305.814 kb on - strand at 5305.837 kb on - strand at 5305.857 kb on - strand at 5305.858 kb on + strand at 5305.965 kb on + strand at 5305.965 kb on + strand at 5305.966 kb on - strand at 5305.987 kb on + strand at 5305.988 kb on - strand at 5305.992 kb on - strand at 5305.992 kb on - strand at 5305.992 kb on - strand at 5305.992 kb on - strand at 5306.006 kb on + strand at 5306.016 kb on - strand at 5306.036 kb on + strand at 5306.037 kb on - strand at 5306.066 kb on + strand at 5306.066 kb on + strand at 5306.066 kb on + strand at 5306.067 kb on - strand at 5306.069 kb on - strand at 5306.175 kb on - strand at 5306.175 kb on - strand at 5306.233 kb on - strand at 5306.233 kb on - strand at 5306.264 kb on + strand, within CA265_RS21550 at 5306.303 kb on + strand, within CA265_RS21550 at 5306.335 kb on + strand, within CA265_RS21550 at 5306.442 kb on + strand, within CA265_RS21550 at 5306.443 kb on - strand, within CA265_RS21550 at 5306.446 kb on + strand, within CA265_RS21550 at 5306.507 kb on - strand, within CA265_RS21550 at 5306.508 kb on + strand, within CA265_RS21550 at 5306.531 kb on + strand, within CA265_RS21550 at 5306.531 kb on + strand, within CA265_RS21550 at 5306.564 kb on + strand, within CA265_RS21550 at 5306.565 kb on - strand, within CA265_RS21550 at 5306.604 kb on + strand, within CA265_RS21550 at 5306.617 kb on + strand, within CA265_RS21550 at 5306.617 kb on + strand, within CA265_RS21550 at 5306.617 kb on + strand, within CA265_RS21550 at 5306.618 kb on - strand, within CA265_RS21550 at 5306.676 kb on - strand, within CA265_RS21550 at 5306.692 kb on + strand, within CA265_RS21550 at 5306.721 kb on + strand, within CA265_RS21550 at 5306.721 kb on + strand, within CA265_RS21550 at 5306.721 kb on + strand, within CA265_RS21550 at 5306.722 kb on - strand, within CA265_RS21550 at 5306.752 kb on - strand, within CA265_RS21550 at 5306.758 kb on - strand, within CA265_RS21550 at 5306.784 kb on - strand, within CA265_RS21550 at 5306.795 kb on + strand, within CA265_RS21550 at 5306.868 kb on + strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.876 kb on - strand, within CA265_RS21550 at 5306.878 kb on - strand, within CA265_RS21550 at 5306.908 kb on - strand, within CA265_RS21550 at 5306.918 kb on - strand, within CA265_RS21550 at 5306.958 kb on - strand, within CA265_RS21550 at 5307.154 kb on - strand, within CA265_RS21550 at 5307.154 kb on - strand, within CA265_RS21550 at 5307.166 kb on + strand, within CA265_RS21550 at 5307.226 kb on + strand, within CA265_RS21550 at 5307.231 kb on + strand, within CA265_RS21550 at 5307.232 kb on - strand, within CA265_RS21550 at 5307.237 kb on + strand, within CA265_RS21550 at 5307.259 kb on + strand, within CA265_RS21550 at 5307.266 kb on + strand, within CA265_RS21550 at 5307.266 kb on + strand, within CA265_RS21550 at 5307.293 kb on + strand, within CA265_RS21550 at 5307.294 kb on - strand, within CA265_RS21550 at 5307.298 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.367 kb on - strand, within CA265_RS21550 at 5307.371 kb on + strand, within CA265_RS21550 at 5307.377 kb on + strand, within CA265_RS21550 at 5307.378 kb on - strand, within CA265_RS21550 at 5307.423 kb on - strand, within CA265_RS21550 at 5307.439 kb on - strand, within CA265_RS21550 at 5307.453 kb on + strand, within CA265_RS21550 at 5307.466 kb on - strand, within CA265_RS21550 at 5307.490 kb on + strand, within CA265_RS21550 at 5307.491 kb on - strand, within CA265_RS21550 at 5307.549 kb on + strand, within CA265_RS21550 at 5307.571 kb on + strand, within CA265_RS21550 at 5307.649 kb on - strand, within CA265_RS21550 at 5307.658 kb on + strand, within CA265_RS21550 at 5307.686 kb on + strand, within CA265_RS21550 at 5307.687 kb on - strand, within CA265_RS21550 at 5307.738 kb on + strand, within CA265_RS21550 at 5307.743 kb on - strand, within CA265_RS21550 at 5307.774 kb on + strand, within CA265_RS21550 at 5307.832 kb on + strand, within CA265_RS21550 at 5307.856 kb on - strand, within CA265_RS21550 at 5307.862 kb on + strand, within CA265_RS21550 at 5307.863 kb on - strand, within CA265_RS21550 at 5307.910 kb on - strand, within CA265_RS21550 at 5307.938 kb on - strand, within CA265_RS21550 at 5307.938 kb on - strand, within CA265_RS21550 at 5307.943 kb on + strand, within CA265_RS21550 at 5307.943 kb on + strand, within CA265_RS21550 at 5307.944 kb on - strand, within CA265_RS21550 at 5307.999 kb on + strand, within CA265_RS21550 at 5308.055 kb on + strand, within CA265_RS21550 at 5308.056 kb on - strand, within CA265_RS21550 at 5308.071 kb on + strand, within CA265_RS21550 at 5308.072 kb on - strand, within CA265_RS21550 at 5308.090 kb on - strand, within CA265_RS21550 at 5308.103 kb on + strand, within CA265_RS21550 at 5308.104 kb on - strand, within CA265_RS21550 at 5308.106 kb on + strand, within CA265_RS21550 at 5308.134 kb on - strand, within CA265_RS21550 at 5308.137 kb on + strand, within CA265_RS21550 at 5308.196 kb on + strand, within CA265_RS21550 at 5308.258 kb on + strand, within CA265_RS21550 at 5308.259 kb on - strand, within CA265_RS21550 at 5308.344 kb on - strand at 5308.364 kb on + strand at 5308.450 kb on - strand at 5308.463 kb on - strand at 5308.472 kb on + strand at 5308.477 kb on - strand at 5308.496 kb on + strand at 5308.558 kb on + strand at 5308.579 kb on + strand at 5308.579 kb on + strand at 5308.662 kb on + strand at 5308.772 kb on + strand at 5308.773 kb on - strand at 5308.930 kb on - strand, within CA265_RS21555 at 5308.946 kb on + strand, within CA265_RS21555 at 5309.097 kb on + strand, within CA265_RS21555 at 5309.216 kb on + strand, within CA265_RS21555 at 5309.259 kb on - strand, within CA265_RS21555 at 5309.280 kb on - strand, within CA265_RS21555 at 5309.330 kb on + strand, within CA265_RS21555 at 5309.470 kb on - strand, within CA265_RS21555
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,305,008 + CA265_RS21545 0.28 +0.9 5,305,009 - CA265_RS21545 0.28 +0.1 5,305,016 - CA265_RS21545 0.29 -1.1 5,305,016 - CA265_RS21545 0.29 -0.3 5,305,025 - CA265_RS21545 0.30 -0.3 5,305,030 + CA265_RS21545 0.30 -0.0 5,305,032 + CA265_RS21545 0.30 -0.6 5,305,033 - CA265_RS21545 0.30 +0.3 5,305,189 + CA265_RS21545 0.43 +1.9 5,305,193 + CA265_RS21545 0.43 -0.5 5,305,193 + CA265_RS21545 0.43 -0.4 5,305,213 + CA265_RS21545 0.45 -0.9 5,305,213 + CA265_RS21545 0.45 +2.0 5,305,239 - CA265_RS21545 0.47 -1.2 5,305,241 - CA265_RS21545 0.47 -1.9 5,305,241 - CA265_RS21545 0.47 -0.4 5,305,393 + CA265_RS21545 0.59 -1.0 5,305,393 + CA265_RS21545 0.59 +0.2 5,305,408 + CA265_RS21545 0.60 +0.4 5,305,416 - CA265_RS21545 0.61 -0.7 5,305,428 + CA265_RS21545 0.62 -0.2 5,305,511 + CA265_RS21545 0.69 +0.3 5,305,549 - CA265_RS21545 0.72 +0.3 5,305,573 + CA265_RS21545 0.73 -0.1 5,305,592 - CA265_RS21545 0.75 +0.2 5,305,639 + CA265_RS21545 0.79 +0.7 5,305,711 + CA265_RS21545 0.85 -0.5 5,305,734 + CA265_RS21545 0.86 -1.6 5,305,735 - CA265_RS21545 0.86 -0.4 5,305,776 + CA265_RS21545 0.90 -2.2 5,305,777 - CA265_RS21545 0.90 +0.8 5,305,784 + -1.2 5,305,784 + +1.1 5,305,785 - -0.3 5,305,786 + +0.3 5,305,814 - +0.6 5,305,837 - -0.4 5,305,857 - -0.1 5,305,858 + -0.1 5,305,965 + -0.0 5,305,965 + +0.7 5,305,966 - -0.9 5,305,987 + -0.9 5,305,988 - -0.2 5,305,992 - -1.3 5,305,992 - +1.0 5,305,992 - +1.3 5,305,992 - -0.4 5,306,006 + -1.2 5,306,016 - +0.4 5,306,036 + -1.3 5,306,037 - -0.3 5,306,066 + -0.9 5,306,066 + +0.3 5,306,066 + -0.0 5,306,067 - +0.7 5,306,069 - -0.6 5,306,175 - -1.3 5,306,175 - -1.0 5,306,233 - +0.4 5,306,233 - -0.1 5,306,264 + CA265_RS21550 0.11 +0.9 5,306,303 + CA265_RS21550 0.12 +0.2 5,306,335 + CA265_RS21550 0.13 -2.4 5,306,442 + CA265_RS21550 0.18 -0.9 5,306,443 - CA265_RS21550 0.18 -1.0 5,306,446 + CA265_RS21550 0.18 -0.9 5,306,507 - CA265_RS21550 0.20 -0.5 5,306,508 + CA265_RS21550 0.20 -1.5 5,306,531 + CA265_RS21550 0.21 -0.3 5,306,531 + CA265_RS21550 0.21 -1.8 5,306,564 + CA265_RS21550 0.23 -0.5 5,306,565 - CA265_RS21550 0.23 -0.1 5,306,604 + CA265_RS21550 0.24 +0.1 5,306,617 + CA265_RS21550 0.25 -1.5 5,306,617 + CA265_RS21550 0.25 +0.2 5,306,617 + CA265_RS21550 0.25 -3.4 5,306,618 - CA265_RS21550 0.25 +0.0 5,306,676 - CA265_RS21550 0.27 +0.5 5,306,692 + CA265_RS21550 0.28 -0.3 5,306,721 + CA265_RS21550 0.29 -0.4 5,306,721 + CA265_RS21550 0.29 -1.3 5,306,721 + CA265_RS21550 0.29 -0.6 5,306,722 - CA265_RS21550 0.29 -0.3 5,306,752 - CA265_RS21550 0.30 +0.2 5,306,758 - CA265_RS21550 0.30 -0.4 5,306,784 - CA265_RS21550 0.31 -1.6 5,306,795 + CA265_RS21550 0.32 -0.6 5,306,868 + CA265_RS21550 0.35 -1.0 5,306,876 - CA265_RS21550 0.35 +0.8 5,306,876 - CA265_RS21550 0.35 +0.0 5,306,876 - CA265_RS21550 0.35 -0.5 5,306,876 - CA265_RS21550 0.35 +0.6 5,306,878 - CA265_RS21550 0.35 +0.4 5,306,908 - CA265_RS21550 0.36 -0.3 5,306,918 - CA265_RS21550 0.37 -0.4 5,306,958 - CA265_RS21550 0.38 +0.3 5,307,154 - CA265_RS21550 0.46 +1.3 5,307,154 - CA265_RS21550 0.46 -1.0 5,307,166 + CA265_RS21550 0.46 +0.4 5,307,226 + CA265_RS21550 0.49 -0.5 5,307,231 + CA265_RS21550 0.49 -1.1 5,307,232 - CA265_RS21550 0.49 -0.5 5,307,237 + CA265_RS21550 0.49 -1.3 5,307,259 + CA265_RS21550 0.50 +2.3 5,307,266 + CA265_RS21550 0.50 +0.1 5,307,266 + CA265_RS21550 0.50 +0.1 5,307,293 + CA265_RS21550 0.52 -1.0 5,307,294 - CA265_RS21550 0.52 -0.9 5,307,298 - CA265_RS21550 0.52 -0.6 5,307,367 - CA265_RS21550 0.54 +0.5 5,307,367 - CA265_RS21550 0.54 -0.8 5,307,367 - CA265_RS21550 0.54 -1.1 5,307,367 - CA265_RS21550 0.54 +0.6 5,307,371 + CA265_RS21550 0.55 +0.7 5,307,377 + CA265_RS21550 0.55 -1.1 5,307,378 - CA265_RS21550 0.55 +0.1 5,307,423 - CA265_RS21550 0.57 -0.9 5,307,439 - CA265_RS21550 0.57 -0.6 5,307,453 + CA265_RS21550 0.58 -0.6 5,307,466 - CA265_RS21550 0.58 +0.2 5,307,490 + CA265_RS21550 0.59 +0.9 5,307,491 - CA265_RS21550 0.59 -1.1 5,307,549 + CA265_RS21550 0.62 +0.2 5,307,571 + CA265_RS21550 0.63 +0.5 5,307,649 - CA265_RS21550 0.66 -1.7 5,307,658 + CA265_RS21550 0.66 -0.4 5,307,686 + CA265_RS21550 0.67 +1.5 5,307,687 - CA265_RS21550 0.67 -0.1 5,307,738 + CA265_RS21550 0.69 -1.1 5,307,743 - CA265_RS21550 0.69 +0.1 5,307,774 + CA265_RS21550 0.71 +0.1 5,307,832 + CA265_RS21550 0.73 -1.8 5,307,856 - CA265_RS21550 0.74 -1.2 5,307,862 + CA265_RS21550 0.74 -1.6 5,307,863 - CA265_RS21550 0.74 -0.9 5,307,910 - CA265_RS21550 0.76 -0.0 5,307,938 - CA265_RS21550 0.77 +1.1 5,307,938 - CA265_RS21550 0.77 -0.6 5,307,943 + CA265_RS21550 0.77 -0.5 5,307,943 + CA265_RS21550 0.77 +0.7 5,307,944 - CA265_RS21550 0.77 +0.7 5,307,999 + CA265_RS21550 0.80 -1.4 5,308,055 + CA265_RS21550 0.82 +0.3 5,308,056 - CA265_RS21550 0.82 -0.9 5,308,071 + CA265_RS21550 0.82 -1.6 5,308,072 - CA265_RS21550 0.82 -0.4 5,308,090 - CA265_RS21550 0.83 -1.2 5,308,103 + CA265_RS21550 0.84 +0.1 5,308,104 - CA265_RS21550 0.84 +0.1 5,308,106 + CA265_RS21550 0.84 -1.6 5,308,134 - CA265_RS21550 0.85 -1.8 5,308,137 + CA265_RS21550 0.85 -1.0 5,308,196 + CA265_RS21550 0.87 -0.6 5,308,258 + CA265_RS21550 0.90 -2.4 5,308,259 - CA265_RS21550 0.90 -0.2 5,308,344 - -0.3 5,308,364 + -0.6 5,308,450 - -0.4 5,308,463 - +1.0 5,308,472 + +0.3 5,308,477 - +0.3 5,308,496 + +0.5 5,308,558 + +0.4 5,308,579 + -1.0 5,308,579 + -0.4 5,308,662 + +0.6 5,308,772 + -0.3 5,308,773 - -0.2 5,308,930 - CA265_RS21555 0.23 +0.5 5,308,946 + CA265_RS21555 0.25 -1.6 5,309,097 + CA265_RS21555 0.42 -0.0 5,309,216 + CA265_RS21555 0.56 +0.9 5,309,259 - CA265_RS21555 0.61 -0.8 5,309,280 - CA265_RS21555 0.63 -2.2 5,309,330 + CA265_RS21555 0.69 +0.9 5,309,470 - CA265_RS21555 0.85 +0.7
Or see this region's nucleotide sequence