Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21100 and CA265_RS21105 are separated by 61 nucleotides CA265_RS21105 and CA265_RS21110 are separated by 78 nucleotides CA265_RS21110 and CA265_RS21115 are separated by 43 nucleotides CA265_RS21115 and CA265_RS21120 overlap by 32 nucleotides
CA265_RS21100: CA265_RS21100 - acyl-CoA thioesterase, at 5,200,294 to 5,200,680
_RS21100
CA265_RS21105: CA265_RS21105 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 5,200,742 to 5,201,407
_RS21105
CA265_RS21110: CA265_RS21110 - phosphatidate cytidylyltransferase, at 5,201,486 to 5,202,295
_RS21110
CA265_RS21115: CA265_RS21115 - hypothetical protein, at 5,202,339 to 5,202,557
_RS21115
CA265_RS21120: CA265_RS21120 - CPBP family intramembrane metalloprotease domain-containing protein, at 5,202,526 to 5,203,452
_RS21120
Position (kb) 5201
5202
5203 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5200.509 kb on + strand, within CA265_RS21100 at 5200.509 kb on + strand, within CA265_RS21100 at 5200.510 kb on - strand, within CA265_RS21100 at 5200.510 kb on - strand, within CA265_RS21100 at 5200.533 kb on - strand, within CA265_RS21100 at 5200.548 kb on + strand, within CA265_RS21100 at 5200.577 kb on - strand, within CA265_RS21100 at 5200.591 kb on + strand, within CA265_RS21100 at 5200.777 kb on + strand at 5200.847 kb on - strand, within CA265_RS21105 at 5200.948 kb on - strand, within CA265_RS21105 at 5200.948 kb on - strand, within CA265_RS21105 at 5201.077 kb on + strand, within CA265_RS21105 at 5201.077 kb on + strand, within CA265_RS21105 at 5201.078 kb on - strand, within CA265_RS21105 at 5201.125 kb on + strand, within CA265_RS21105 at 5201.126 kb on - strand, within CA265_RS21105 at 5201.133 kb on - strand, within CA265_RS21105 at 5201.133 kb on - strand, within CA265_RS21105 at 5201.156 kb on + strand, within CA265_RS21105 at 5201.157 kb on - strand, within CA265_RS21105 at 5201.157 kb on - strand, within CA265_RS21105 at 5201.245 kb on + strand, within CA265_RS21105 at 5201.292 kb on + strand, within CA265_RS21105 at 5201.312 kb on - strand, within CA265_RS21105 at 5201.312 kb on - strand, within CA265_RS21105 at 5201.354 kb on - strand at 5201.381 kb on + strand at 5201.384 kb on + strand at 5201.392 kb on - strand at 5202.298 kb on - strand at 5202.326 kb on - strand at 5202.334 kb on + strand at 5202.334 kb on + strand at 5202.364 kb on + strand, within CA265_RS21115 at 5202.365 kb on - strand, within CA265_RS21115 at 5202.365 kb on - strand, within CA265_RS21115 at 5202.365 kb on - strand, within CA265_RS21115 at 5202.365 kb on - strand, within CA265_RS21115 at 5202.365 kb on - strand, within CA265_RS21115 at 5202.387 kb on + strand, within CA265_RS21115 at 5202.388 kb on - strand, within CA265_RS21115 at 5202.388 kb on - strand, within CA265_RS21115 at 5202.409 kb on - strand, within CA265_RS21115 at 5202.423 kb on - strand, within CA265_RS21115 at 5202.423 kb on - strand, within CA265_RS21115 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.519 kb on - strand, within CA265_RS21115 at 5202.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,200,509 + CA265_RS21100 0.56 -1.1 5,200,509 + CA265_RS21100 0.56 -3.2 5,200,510 - CA265_RS21100 0.56 +0.0 5,200,510 - CA265_RS21100 0.56 -0.5 5,200,533 - CA265_RS21100 0.62 +0.2 5,200,548 + CA265_RS21100 0.66 +0.7 5,200,577 - CA265_RS21100 0.73 -1.2 5,200,591 + CA265_RS21100 0.77 -2.3 5,200,777 + -0.5 5,200,847 - CA265_RS21105 0.16 +0.3 5,200,948 - CA265_RS21105 0.31 -1.2 5,200,948 - CA265_RS21105 0.31 -1.0 5,201,077 + CA265_RS21105 0.50 +0.4 5,201,077 + CA265_RS21105 0.50 -1.8 5,201,078 - CA265_RS21105 0.50 +0.4 5,201,125 + CA265_RS21105 0.58 +0.0 5,201,126 - CA265_RS21105 0.58 +0.3 5,201,133 - CA265_RS21105 0.59 -1.2 5,201,133 - CA265_RS21105 0.59 -0.2 5,201,156 + CA265_RS21105 0.62 +0.2 5,201,157 - CA265_RS21105 0.62 +0.7 5,201,157 - CA265_RS21105 0.62 +1.3 5,201,245 + CA265_RS21105 0.76 -0.7 5,201,292 + CA265_RS21105 0.83 -0.1 5,201,312 - CA265_RS21105 0.86 -0.9 5,201,312 - CA265_RS21105 0.86 +0.2 5,201,354 - +0.5 5,201,381 + +0.3 5,201,384 + -1.5 5,201,392 - -1.5 5,202,298 - +0.6 5,202,326 - +0.6 5,202,334 + -2.0 5,202,334 + -0.5 5,202,364 + CA265_RS21115 0.11 -1.0 5,202,365 - CA265_RS21115 0.12 -0.9 5,202,365 - CA265_RS21115 0.12 -0.3 5,202,365 - CA265_RS21115 0.12 -0.5 5,202,365 - CA265_RS21115 0.12 +0.9 5,202,365 - CA265_RS21115 0.12 +0.8 5,202,387 + CA265_RS21115 0.22 -0.3 5,202,388 - CA265_RS21115 0.22 -1.1 5,202,388 - CA265_RS21115 0.22 +0.0 5,202,409 - CA265_RS21115 0.32 -0.7 5,202,423 - CA265_RS21115 0.38 -1.1 5,202,423 - CA265_RS21115 0.38 +0.2 5,202,519 - CA265_RS21115 0.82 +0.7 5,202,519 - CA265_RS21115 0.82 -1.0 5,202,519 - CA265_RS21115 0.82 -0.4 5,202,519 - CA265_RS21115 0.82 +0.6 5,202,581 - +0.7
Or see this region's nucleotide sequence