Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS20030

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
4,952,147	+		CA265_RS20025	0.66	-0.5
4,952,148	-		CA265_RS20025	0.66	+0.6
4,952,148	-		CA265_RS20025	0.66	-0.9
4,952,152	+		CA265_RS20025	0.66	+0.4
4,952,206	-		CA265_RS20025	0.70	-1.5
4,952,242	-		CA265_RS20025	0.72	-0.0
4,952,253	+		CA265_RS20025	0.72	+0.0
4,952,264	+		CA265_RS20025	0.73	-0.4
4,952,307	-		CA265_RS20025	0.76	-0.1
4,952,307	-		CA265_RS20025	0.76	-0.8
4,952,308	+		CA265_RS20025	0.76	+0.6
4,952,308	+		CA265_RS20025	0.76	+1.3
4,952,309	-		CA265_RS20025	0.76	+1.3
4,952,309	-		CA265_RS20025	0.76	-0.5
4,952,340	+		CA265_RS20025	0.78	+0.7
4,952,341	-		CA265_RS20025	0.78	-0.8
4,952,341	-		CA265_RS20025	0.78	-0.4
4,952,352	+		CA265_RS20025	0.78	-0.2
4,952,364	-		CA265_RS20025	0.79	-0.8
4,952,364	-		CA265_RS20025	0.79	+0.4
4,952,447	-		CA265_RS20025	0.84	-0.7
4,952,480	-		CA265_RS20025	0.86	+0.7
4,952,492	-		CA265_RS20025	0.87	-0.8
4,952,495	+		CA265_RS20025	0.87	-0.8
4,952,701	-				-0.8
4,952,725	+				+0.7
4,952,761	-				-0.3
4,952,802	-				+0.5
4,952,894	+				+2.9
4,952,896	+				+3.3
4,952,897	-				+0.3
4,952,934	+				+2.0
4,953,066	+				+3.5
4,953,182	-				+1.0
4,953,278	+				-0.4
4,953,279	-				-2.6
4,953,335	-				-0.4
4,953,361	+		CA265_RS20030	0.11	+1.1
4,953,383	+		CA265_RS20030	0.12	+1.0
4,953,387	-		CA265_RS20030	0.12	+0.2
4,953,452	-		CA265_RS20030	0.14	-0.6
4,953,463	-		CA265_RS20030	0.15	+0.2
4,953,519	+		CA265_RS20030	0.17	-1.5
4,953,520	-		CA265_RS20030	0.17	-0.7
4,953,520	-		CA265_RS20030	0.17	-0.5
4,953,529	+		CA265_RS20030	0.17	+0.1
4,953,530	-		CA265_RS20030	0.18	-0.7
4,953,601	+		CA265_RS20030	0.20	-2.4
4,953,601	+		CA265_RS20030	0.20	-1.0
4,953,637	-		CA265_RS20030	0.22	+0.7
4,953,637	-		CA265_RS20030	0.22	-0.3
4,953,643	-		CA265_RS20030	0.22	-0.9
4,953,656	-		CA265_RS20030	0.23	-0.9
4,953,713	+		CA265_RS20030	0.25	-0.4
4,953,713	+		CA265_RS20030	0.25	-0.5
4,953,713	+		CA265_RS20030	0.25	-0.0
4,953,751	+		CA265_RS20030	0.26	+0.7
4,953,806	+		CA265_RS20030	0.29	+0.2
4,953,841	+		CA265_RS20030	0.30	+0.3
4,953,899	+		CA265_RS20030	0.32	-0.7
4,953,930	+		CA265_RS20030	0.34	-1.0
4,953,944	-		CA265_RS20030	0.34	+0.6
4,954,006	+		CA265_RS20030	0.37	-1.7
4,954,007	-		CA265_RS20030	0.37	-0.0
4,954,052	-		CA265_RS20030	0.38	+0.5
4,954,072	+		CA265_RS20030	0.39	+0.2
4,954,097	-		CA265_RS20030	0.40	-0.2
4,954,105	+		CA265_RS20030	0.41	+0.6
4,954,106	-		CA265_RS20030	0.41	-0.4
4,954,112	+		CA265_RS20030	0.41	+0.2
4,954,249	-		CA265_RS20030	0.46	-0.3
4,954,284	+		CA265_RS20030	0.48	-0.1
4,954,340	+		CA265_RS20030	0.50	-0.4
4,954,349	+		CA265_RS20030	0.50	+0.3
4,954,369	+		CA265_RS20030	0.51	-0.7
4,954,370	-		CA265_RS20030	0.51	-1.8
4,954,426	+		CA265_RS20030	0.53	-1.1
4,954,645	+		CA265_RS20030	0.62	-0.2
4,954,645	+		CA265_RS20030	0.62	-0.2
4,954,646	-		CA265_RS20030	0.62	+0.1
4,954,651	+		CA265_RS20030	0.62	-0.1
4,954,873	+		CA265_RS20030	0.71	-0.2
4,954,874	-		CA265_RS20030	0.71	+0.3
4,954,894	+		CA265_RS20030	0.72	-0.1
4,954,957	+		CA265_RS20030	0.75	-0.7
4,954,974	-		CA265_RS20030	0.75	+0.4
4,954,992	-		CA265_RS20030	0.76	+0.3
4,954,992	-		CA265_RS20030	0.76	-0.1
4,954,994	-		CA265_RS20030	0.76	-1.4
4,955,011	+		CA265_RS20030	0.77	-0.2
4,955,023	-		CA265_RS20030	0.77	-1.3
4,955,052	+		CA265_RS20030	0.78	+0.1
4,955,055	-		CA265_RS20030	0.79	-0.5
4,955,055	-		CA265_RS20030	0.79	-0.3
4,955,086	+		CA265_RS20030	0.80	-0.7
4,955,103	+		CA265_RS20030	0.80	-0.9
4,955,151	+		CA265_RS20030	0.82	-1.1
4,955,151	+		CA265_RS20030	0.82	+1.2
4,955,163	-		CA265_RS20030	0.83	-1.1
4,955,248	+		CA265_RS20030	0.86	-0.2
4,955,353	-				-0.2
4,955,406	+				-0.9
4,955,407	-				+3.6
4,955,456	+				-0.1
4,955,457	-				-0.4
4,955,457	-				+0.1
4,955,503	+				-0.9
4,955,557	+				-0.3
4,955,629	-				-0.3
4,955,655	+				+0.9
4,955,756	-				-1.4
4,955,768	+		CA265_RS20035	0.11	-0.9
4,955,769	-		CA265_RS20035	0.11	-0.3
4,955,835	+		CA265_RS20035	0.20	-0.4
4,955,903	+		CA265_RS20035	0.29	-2.1
4,955,951	+				+0.7
4,955,952	-		CA265_RS20035	0.36	+0.3
4,955,958	-		CA265_RS20035	0.37	+0.2
4,955,999	+		CA265_RS20035	0.42	+0.3
4,956,045	+		CA265_RS20035	0.48	-0.2
4,956,095	-		CA265_RS20035	0.55	+0.2
4,956,098	+		CA265_RS20035	0.55	-0.1
4,956,148	-		CA265_RS20035	0.62	+0.8
4,956,174	-		CA265_RS20035	0.65	-1.1
4,956,178	-		CA265_RS20035	0.66	+0.5
4,956,406	+				-0.2
4,956,433	+				+0.5
4,956,433	+				-0.4
4,956,433	+				-0.3
4,956,441	-				-0.3
4,956,442	+				-0.1
4,956,443	-				+0.3
4,956,454	+				-0.5
4,956,454	+				-0.2
4,956,454	+				-1.0
4,956,454	+				-0.5
4,956,455	-				-2.1
4,956,455	-				+0.7
4,956,465	-				-0.9
4,956,480	+				+0.1
4,956,483	-				+0.7
4,956,486	+		CA265_RS20040	0.11	-0.0
4,956,509	+		CA265_RS20040	0.16	-0.7
4,956,546	-		CA265_RS20040	0.23	+0.1