Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15070
Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Vancomycin 0.06 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,796,603 | + | +0.0 | |||
3,796,604 | - | -0.1 | |||
3,796,609 | + | +0.4 | |||
3,796,610 | - | +0.8 | |||
3,796,741 | - | +0.4 | |||
3,796,764 | + | +1.3 | |||
3,796,765 | - | +0.4 | |||
3,796,775 | + | +1.6 | |||
3,797,488 | - | -0.5 | |||
3,797,512 | + | -0.7 | |||
3,797,558 | + | CA265_RS15070 | 0.14 | +1.8 | |
3,797,646 | + | CA265_RS15070 | 0.31 | +1.3 | |
3,797,710 | - | CA265_RS15070 | 0.43 | +1.3 | |
3,797,815 | - | CA265_RS15070 | 0.63 | +1.7 | |
3,797,817 | - | CA265_RS15070 | 0.63 | +1.5 | |
3,797,903 | + | CA265_RS15070 | 0.79 | +3.3 | |
3,797,926 | - | CA265_RS15070 | 0.84 | +1.8 | |
3,797,938 | + | CA265_RS15070 | 0.86 | +2.8 | |
3,798,031 | + | -1.2 | |||
3,798,032 | - | -0.7 | |||
3,798,037 | + | -2.6 | |||
3,798,088 | + | +0.1 | |||
3,798,107 | + | -1.7 |
Or see this region's nucleotide sequence