Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS08450

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,104,456	-		CA265_RS08440	0.74	-0.3
2,104,459	+		CA265_RS08440	0.74	+0.7
2,104,459	+		CA265_RS08440	0.74	+1.0
2,104,558	+		CA265_RS08440	0.80	+1.5
2,104,559	-		CA265_RS08440	0.80	-0.0
2,104,628	+		CA265_RS08440	0.84	-0.8
2,104,628	+		CA265_RS08440	0.84	-0.9
2,104,632	+		CA265_RS08440	0.84	-0.4
2,104,658	+				+1.7
2,104,780	+				-0.2
2,104,804	+				+1.1
2,104,844	+				-0.1
2,104,897	-				-0.7
2,104,897	-				+0.1
2,104,899	-				+0.1
2,104,958	+				+0.7
2,104,958	+				+0.2
2,104,983	+				+0.4
2,104,984	-				-0.6
2,105,038	+		CA265_RS08445	0.25	-1.6
2,105,298	+				+0.1
2,105,308	+				+0.3
2,105,308	+				+0.8
2,105,309	-				+0.3
2,105,384	+				-0.4
2,105,385	-				-0.0
2,105,385	-				-0.4
2,105,430	-				-0.2
2,105,450	+				+0.5
2,105,451	-				+0.2
2,105,468	+				-0.4
2,105,490	-				+0.8
2,105,590	-				+0.6
2,105,638	+				-1.2
2,105,738	-				-0.7
2,105,803	+		CA265_RS08450	0.12	+0.6
2,105,803	+		CA265_RS08450	0.12	-0.6
2,105,803	+		CA265_RS08450	0.12	+0.0
2,105,803	+		CA265_RS08450	0.12	-0.7
2,105,804	-		CA265_RS08450	0.12	+0.6
2,105,907	+		CA265_RS08450	0.15	+0.6
2,105,908	-		CA265_RS08450	0.15	-0.3
2,105,908	-		CA265_RS08450	0.15	-0.1
2,105,973	+		CA265_RS08450	0.17	+0.5
2,105,974	-		CA265_RS08450	0.17	-2.1
2,105,978	-		CA265_RS08450	0.17	+0.0
2,105,978	-		CA265_RS08450	0.17	+0.6
2,105,978	-		CA265_RS08450	0.17	-0.7
2,106,176	+		CA265_RS08450	0.24	+0.4
2,106,459	+		CA265_RS08450	0.33	+1.2
2,106,475	-		CA265_RS08450	0.33	-0.3
2,106,520	-		CA265_RS08450	0.34	-0.1
2,106,572	-		CA265_RS08450	0.36	-0.4
2,106,577	+		CA265_RS08450	0.36	-0.4
2,106,640	+		CA265_RS08450	0.38	+1.4
2,106,704	+		CA265_RS08450	0.40	-0.4
2,106,786	-		CA265_RS08450	0.43	-0.1
2,106,799	-		CA265_RS08450	0.43	+0.7
2,106,925	+		CA265_RS08450	0.47	+0.4
2,106,926	-		CA265_RS08450	0.47	-0.3
2,106,954	+		CA265_RS08450	0.48	+0.2
2,106,955	-		CA265_RS08450	0.48	+0.0
2,107,025	+		CA265_RS08450	0.50	+0.3
2,107,054	-		CA265_RS08450	0.51	+0.4
2,107,104	+		CA265_RS08450	0.53	-0.5
2,107,138	-		CA265_RS08450	0.54	-0.7
2,107,143	+		CA265_RS08450	0.54	+0.6
2,107,164	+		CA265_RS08450	0.55	+1.6
2,107,283	-		CA265_RS08450	0.59	-0.0
2,107,347	-		CA265_RS08450	0.61	-0.4
2,107,347	-		CA265_RS08450	0.61	+3.2
2,107,368	+		CA265_RS08450	0.61	+0.1
2,107,369	-				+1.2
2,107,455	+		CA265_RS08450	0.64	+1.8
2,107,549	+		CA265_RS08450	0.67	-0.8
2,107,550	-		CA265_RS08450	0.67	-0.4
2,107,566	+		CA265_RS08450	0.68	+1.0
2,107,566	+		CA265_RS08450	0.68	-0.6
2,107,584	+		CA265_RS08450	0.68	-0.1
2,107,585	-		CA265_RS08450	0.68	+0.7
2,107,589	+		CA265_RS08450	0.68	+0.4
2,107,660	-		CA265_RS08450	0.70	-0.5
2,107,681	+		CA265_RS08450	0.71	+1.7
2,107,682	-		CA265_RS08450	0.71	+0.4
2,107,682	-		CA265_RS08450	0.71	+0.2
2,107,682	-		CA265_RS08450	0.71	-0.4
2,107,722	+		CA265_RS08450	0.72	+1.2
2,107,758	+		CA265_RS08450	0.74	+0.4
2,107,765	-		CA265_RS08450	0.74	-0.8
2,107,787	-				+0.7
2,107,828	+		CA265_RS08450	0.76	+0.5
2,107,828	+		CA265_RS08450	0.76	+0.3
2,107,829	-		CA265_RS08450	0.76	+0.1
2,107,864	-		CA265_RS08450	0.77	+0.5
2,107,872	+		CA265_RS08450	0.77	+0.3
2,107,872	+		CA265_RS08450	0.77	+0.6
2,107,937	+				+1.2
2,107,982	+		CA265_RS08450	0.81	+1.9
2,107,982	+		CA265_RS08450	0.81	-1.0
2,107,983	-		CA265_RS08450	0.81	+0.4
2,108,016	-		CA265_RS08450	0.82	-0.1
2,108,063	-		CA265_RS08450	0.83	+0.3
2,108,093	-		CA265_RS08450	0.84	-0.4
2,108,111	+		CA265_RS08450	0.85	+1.7
2,108,144	+		CA265_RS08450	0.86	+0.5
2,108,228	-		CA265_RS08450	0.88	-2.7
2,108,247	+		CA265_RS08450	0.89	-2.8
2,108,303	+				+0.5
2,108,401	+				+2.1
2,108,410	+				+0.9
2,108,548	-				-0.5
2,108,548	-				-0.3
2,108,552	+				-0.1
2,108,553	-				-0.0
2,108,570	+				-0.7
2,108,602	+				+0.1
2,108,603	-				+0.4
2,108,627	-				-0.4
2,108,708	+				+0.4
2,108,767	-		CA265_RS08455	0.12	+0.5
2,108,767	-		CA265_RS08455	0.12	-0.6
2,108,797	+		CA265_RS08455	0.14	+0.5
2,108,798	-		CA265_RS08455	0.15	-0.2
2,108,835	+		CA265_RS08455	0.17	+0.6
2,108,850	+		CA265_RS08455	0.18	+0.1
2,108,851	-		CA265_RS08455	0.18	+0.1
2,108,875	+		CA265_RS08455	0.20	-0.0
2,108,876	-		CA265_RS08455	0.20	+1.2
2,108,926	+		CA265_RS08455	0.24	-0.0
2,108,926	+		CA265_RS08455	0.24	-0.4
2,108,927	-		CA265_RS08455	0.24	+0.7
2,108,961	-		CA265_RS08455	0.26	+0.5
2,108,980	-		CA265_RS08455	0.28	-0.1
2,108,980	-		CA265_RS08455	0.28	-1.3
2,108,984	+		CA265_RS08455	0.28	+0.1
2,109,017	+		CA265_RS08455	0.30	+0.4
2,109,017	+		CA265_RS08455	0.30	+0.8
2,109,155	-		CA265_RS08455	0.40	-0.5
2,109,155	-		CA265_RS08455	0.40	+1.4
2,109,163	+		CA265_RS08455	0.41	-0.8
2,109,205	-		CA265_RS08455	0.44	-0.3
2,109,232	+		CA265_RS08455	0.46	+0.2
2,109,306	+		CA265_RS08455	0.51	+0.2
2,109,306	+		CA265_RS08455	0.51	-0.1
2,109,307	-		CA265_RS08455	0.51	-0.2
2,109,337	+		CA265_RS08455	0.53	+0.3
2,109,337	+		CA265_RS08455	0.53	+0.0
2,109,383	+		CA265_RS08455	0.56	+1.1
2,109,443	+		CA265_RS08455	0.61	+0.1
2,109,444	-		CA265_RS08455	0.61	-0.8
2,109,497	-		CA265_RS08455	0.64	+0.3
2,109,513	-		CA265_RS08455	0.66	-0.1
2,109,513	-		CA265_RS08455	0.66	+0.3
2,109,518	+		CA265_RS08455	0.66	-0.2
2,109,519	-		CA265_RS08455	0.66	-0.7
2,109,549	-		CA265_RS08455	0.68	-0.7
2,109,555	-		CA265_RS08455	0.69	-1.2
2,109,563	-		CA265_RS08455	0.69	+0.4