Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07975

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,988,427	-		CA265_RS07970	0.31	-0.5
1,988,431	-		CA265_RS07970	0.32	-0.3
1,988,454	+		CA265_RS07970	0.34	+0.6
1,988,501	+		CA265_RS07970	0.38	+0.5
1,988,502	-		CA265_RS07970	0.38	+0.7
1,988,585	+		CA265_RS07970	0.46	-0.7
1,988,627	+		CA265_RS07970	0.49	-0.5
1,988,627	+		CA265_RS07970	0.49	-0.6
1,988,628	-		CA265_RS07970	0.50	-0.9
1,988,654	-		CA265_RS07970	0.52	-0.2
1,988,654	-		CA265_RS07970	0.52	+0.0
1,988,662	-		CA265_RS07970	0.53	-0.6
1,988,678	+		CA265_RS07970	0.54	-0.4
1,988,678	+		CA265_RS07970	0.54	+0.1
1,988,679	-		CA265_RS07970	0.54	-0.2
1,988,720	-		CA265_RS07970	0.58	-0.0
1,988,761	+		CA265_RS07970	0.62	+0.6
1,988,785	+		CA265_RS07970	0.64	+0.2
1,988,790	-		CA265_RS07970	0.64	-0.7
1,988,793	+		CA265_RS07970	0.65	+0.0
1,988,794	-		CA265_RS07970	0.65	+0.6
1,988,800	+		CA265_RS07970	0.65	+0.9
1,988,803	+		CA265_RS07970	0.66	+0.9
1,988,823	+		CA265_RS07970	0.67	-0.5
1,988,882	-		CA265_RS07970	0.73	-0.6
1,988,995	+		CA265_RS07970	0.83	-1.7
1,988,995	+		CA265_RS07970	0.83	-0.3
1,988,995	+		CA265_RS07970	0.83	-0.2
1,989,018	+		CA265_RS07970	0.85	-1.0
1,989,038	-		CA265_RS07970	0.87	-0.1
1,989,040	-		CA265_RS07970	0.87	-0.1
1,989,119	-				-0.6
1,989,167	-				+1.3
1,989,293	-				+1.1
1,989,321	-				-1.1
1,989,355	+				-0.4
1,989,428	+				+0.7
1,989,465	+				-0.7
1,989,466	-				+1.5
1,989,466	-				+1.7
1,989,466	-				-0.5
1,989,472	-				-0.5
1,989,543	-				-0.1
1,989,565	-		CA265_RS07975	0.10	+0.6
1,989,607	+		CA265_RS07975	0.14	+0.1
1,989,729	+		CA265_RS07975	0.22	+0.2
1,989,771	+		CA265_RS07975	0.25	-3.1
1,989,771	+		CA265_RS07975	0.25	-0.6
1,989,771	+		CA265_RS07975	0.25	-1.1
1,989,772	-		CA265_RS07975	0.26	-0.1
1,989,772	-		CA265_RS07975	0.26	+0.7
1,989,777	-		CA265_RS07975	0.26	-1.2
1,989,828	+		CA265_RS07975	0.30	-0.6
1,989,829	-		CA265_RS07975	0.30	+1.1
1,989,861	-		CA265_RS07975	0.32	+0.9
1,989,898	-		CA265_RS07975	0.35	+0.5
1,989,943	-		CA265_RS07975	0.38	+2.7
1,990,029	+		CA265_RS07975	0.44	-1.0
1,990,030	-		CA265_RS07975	0.44	-0.5
1,990,036	+				+1.7
1,990,037	-		CA265_RS07975	0.45	-0.1
1,990,072	-		CA265_RS07975	0.47	+0.5
1,990,077	-		CA265_RS07975	0.48	+0.3
1,990,077	-		CA265_RS07975	0.48	+0.1
1,990,079	-		CA265_RS07975	0.48	-1.2
1,990,082	+		CA265_RS07975	0.48	+0.4
1,990,102	-		CA265_RS07975	0.50	-0.4
1,990,154	+		CA265_RS07975	0.53	+0.4
1,990,158	+		CA265_RS07975	0.54	+0.2
1,990,159	-		CA265_RS07975	0.54	-0.2
1,990,159	-		CA265_RS07975	0.54	+2.1
1,990,180	-		CA265_RS07975	0.55	+0.2
1,990,186	-		CA265_RS07975	0.56	-1.2
1,990,273	-		CA265_RS07975	0.62	-0.1
1,990,302	+		CA265_RS07975	0.64	+0.7
1,990,303	-		CA265_RS07975	0.64	+2.3
1,990,328	-		CA265_RS07975	0.66	-1.1
1,990,332	-		CA265_RS07975	0.66	+0.5
1,990,332	-		CA265_RS07975	0.66	+0.7
1,990,360	-		CA265_RS07975	0.68	-0.6
1,990,367	+		CA265_RS07975	0.69	+0.7
1,990,377	-		CA265_RS07975	0.70	-0.9
1,990,390	-		CA265_RS07975	0.71	-0.1
1,990,390	-		CA265_RS07975	0.71	-0.0
1,990,421	+		CA265_RS07975	0.73	-0.0
1,990,427	+		CA265_RS07975	0.73	+0.5
1,990,428	-		CA265_RS07975	0.73	+0.6
1,990,428	-		CA265_RS07975	0.73	+0.3
1,990,459	-		CA265_RS07975	0.76	-1.5
1,990,488	+		CA265_RS07975	0.78	+0.4
1,990,503	+		CA265_RS07975	0.79	-0.2
1,990,511	-		CA265_RS07975	0.79	+1.1
1,990,559	+		CA265_RS07975	0.83	+0.2
1,990,560	-		CA265_RS07975	0.83	+0.5
1,990,573	-		CA265_RS07975	0.84	+0.9
1,990,605	-		CA265_RS07975	0.86	-0.1
1,990,609	-		CA265_RS07975	0.86	-0.0
1,990,636	+		CA265_RS07975	0.88	+0.3
1,990,650	+		CA265_RS07975	0.89	-1.2
1,990,720	+				+0.3
1,990,727	-				+0.3
1,990,765	-				-1.0
1,990,813	-				-0.0
1,990,827	-				-0.6
1,990,839	+				-0.0
1,990,882	-				+0.4
1,990,902	+				-1.3
1,990,982	-				-0.3
1,991,050	+		CA265_RS07980	0.15	-1.9
1,991,116	+		CA265_RS07980	0.21	-0.6
1,991,196	+		CA265_RS07980	0.28	-1.2
1,991,202	-		CA265_RS07980	0.28	+0.6
1,991,206	-		CA265_RS07980	0.29	-0.6
1,991,247	+		CA265_RS07980	0.32	-0.5
1,991,286	+		CA265_RS07980	0.36	-0.8
1,991,303	+		CA265_RS07980	0.37	-0.9
1,991,375	+		CA265_RS07980	0.43	+0.1
1,991,413	+		CA265_RS07980	0.47	-0.6
1,991,442	-		CA265_RS07980	0.49	+0.5
1,991,619	-		CA265_RS07980	0.64	-0.3
1,991,631	-		CA265_RS07980	0.66	+0.1
1,991,665	+		CA265_RS07980	0.68	-0.1
1,991,668	-		CA265_RS07980	0.69	-0.6
1,991,731	+		CA265_RS07980	0.74	+0.0
1,991,760	-		CA265_RS07980	0.77	-0.7
1,991,790	-		CA265_RS07980	0.79	+1.3
1,991,794	-		CA265_RS07980	0.80	+0.2