Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07920

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
1,975,970	+		CA265_RS07915	0.48	-0.8
1,975,973	+		CA265_RS07915	0.48	+0.1
1,975,974	-		CA265_RS07915	0.48	-0.4
1,975,974	-		CA265_RS07915	0.48	-0.4
1,975,975	+		CA265_RS07915	0.48	-3.6
1,975,976	-		CA265_RS07915	0.48	-1.4
1,976,024	+		CA265_RS07915	0.51	-1.7
1,976,025	-		CA265_RS07915	0.52	+0.5
1,976,058	-		CA265_RS07915	0.54	-0.9
1,976,066	+		CA265_RS07915	0.54	-2.5
1,976,070	-		CA265_RS07915	0.55	-1.1
1,976,141	-		CA265_RS07915	0.60	-1.2
1,976,141	-		CA265_RS07915	0.60	+0.4
1,976,141	-		CA265_RS07915	0.60	-0.4
1,976,152	+		CA265_RS07915	0.60	-2.4
1,976,207	-		CA265_RS07915	0.64	-0.7
1,976,245	+		CA265_RS07915	0.67	-3.5
1,976,251	-		CA265_RS07915	0.67	+0.7
1,976,264	-		CA265_RS07915	0.68	-0.5
1,976,281	+		CA265_RS07915	0.69	-1.2
1,976,281	+		CA265_RS07915	0.69	-1.1
1,976,282	-		CA265_RS07915	0.69	-1.4
1,976,299	-		CA265_RS07915	0.71	+0.1
1,976,299	-		CA265_RS07915	0.71	+0.7
1,976,299	-		CA265_RS07915	0.71	-0.7
1,976,330	+		CA265_RS07915	0.73	-0.4
1,976,396	-		CA265_RS07915	0.77	+0.9
1,976,425	-		CA265_RS07915	0.79	+0.8
1,976,473	-		CA265_RS07915	0.83	-0.8
1,976,475	-		CA265_RS07915	0.83	-0.4
1,976,596	-				-0.8
1,976,610	-				+0.5
1,976,629	+				-1.4
1,976,675	+				-0.9
1,976,676	-				+0.1
1,976,734	+				-0.6
1,976,775	+				-1.7
1,976,775	+				-0.5
1,976,776	-				+0.8
1,976,852	+		CA265_RS07920	0.11	-0.6
1,976,880	+		CA265_RS07920	0.14	-1.1
1,976,922	+		CA265_RS07920	0.17	-1.5
1,976,922	+		CA265_RS07920	0.17	-1.0
1,976,922	+		CA265_RS07920	0.17	-0.1
1,976,922	+		CA265_RS07920	0.17	-1.1
1,976,977	+		CA265_RS07920	0.22	-0.5
1,976,977	+		CA265_RS07920	0.22	-1.5
1,976,977	+		CA265_RS07920	0.22	+0.5
1,976,981	-		CA265_RS07920	0.23	-0.4
1,976,981	-		CA265_RS07920	0.23	-0.6
1,977,019	-		CA265_RS07920	0.26	+1.3
1,977,037	+		CA265_RS07920	0.27	-3.2
1,977,094	+		CA265_RS07920	0.32	-1.6
1,977,095	-		CA265_RS07920	0.32	-0.2
1,977,166	-		CA265_RS07920	0.39	-1.4
1,977,170	+		CA265_RS07920	0.39	-0.6
1,977,171	-		CA265_RS07920	0.39	-0.0
1,977,200	+		CA265_RS07920	0.41	-1.4
1,977,201	-		CA265_RS07920	0.42	-0.4
1,977,201	-		CA265_RS07920	0.42	-0.7
1,977,203	-		CA265_RS07920	0.42	-0.3
1,977,215	-		CA265_RS07920	0.43	+0.0
1,977,234	+		CA265_RS07920	0.44	-0.1
1,977,235	-		CA265_RS07920	0.44	+0.6
1,977,235	-		CA265_RS07920	0.44	-0.6
1,977,357	+		CA265_RS07920	0.55	-1.8
1,977,361	+		CA265_RS07920	0.55	-2.0
1,977,436	+		CA265_RS07920	0.62	-2.5
1,977,468	+		CA265_RS07920	0.65	-1.3
1,977,469	-		CA265_RS07920	0.65	+1.8
1,977,469	-		CA265_RS07920	0.65	+0.5
1,977,501	+		CA265_RS07920	0.67	-2.0
1,977,502	-		CA265_RS07920	0.68	-0.3
1,977,552	-		CA265_RS07920	0.72	+1.0
1,977,555	-		CA265_RS07920	0.72	+0.4
1,977,584	-		CA265_RS07920	0.75	+0.4
1,977,623	+		CA265_RS07920	0.78	-1.4
1,977,682	+		CA265_RS07920	0.83	-1.8
1,977,683	-		CA265_RS07920	0.83	-0.7
1,977,689	-		CA265_RS07920	0.84	-1.9
1,977,701	-		CA265_RS07920	0.85	-0.7
1,977,776	-				+0.6
1,977,814	+				-1.4
1,977,828	-				+0.7
1,977,852	+				+0.3
1,977,853	-				-1.1
1,977,853	-				-0.2
1,977,908	-				-2.1
1,977,915	+				-0.2
1,977,916	-				+0.5
1,977,923	-				-0.0
1,977,941	+				-2.0
1,977,944	-				-0.6
1,978,037	-		CA265_RS07925	0.18	+0.5
1,978,037	-		CA265_RS07925	0.18	+0.5
1,978,067	+		CA265_RS07925	0.21	-1.2
1,978,068	-		CA265_RS07925	0.21	+0.3
1,978,079	+		CA265_RS07925	0.23	+0.4
1,978,112	-		CA265_RS07925	0.26	-0.1
1,978,112	-		CA265_RS07925	0.26	+0.3
1,978,212	-		CA265_RS07925	0.38	+2.0
1,978,257	-		CA265_RS07925	0.43	-1.3
1,978,274	+		CA265_RS07925	0.45	-0.9
1,978,300	+		CA265_RS07925	0.48	-1.9
1,978,343	+		CA265_RS07925	0.53	-0.2
1,978,345	+		CA265_RS07925	0.53	-1.0
1,978,515	+		CA265_RS07925	0.72	-0.9
1,978,523	-		CA265_RS07925	0.73	+1.2
1,978,643	+		CA265_RS07925	0.86	-0.9
1,978,644	-		CA265_RS07925	0.87	+0.4
1,978,674	-				-0.4
1,978,679	+				-1.5
1,978,691	+				+0.4
1,978,691	+				-1.0
1,978,745	-				+0.3
1,978,782	+				-2.0
1,978,843	+				-1.7