Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03980 and CA265_RS03985 are separated by 16 nucleotides CA265_RS03985 and CA265_RS03990 overlap by 1 nucleotides
CA265_RS03980: CA265_RS03980 - hypothetical protein, at 949,567 to 951,315
_RS03980
CA265_RS03985: CA265_RS03985 - hypothetical protein, at 951,332 to 953,290
_RS03985
CA265_RS03990: CA265_RS03990 - hypothetical protein, at 953,290 to 954,990
_RS03990
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 950.359 kb on - strand, within CA265_RS03980 at 950.386 kb on - strand, within CA265_RS03980 at 950.389 kb on + strand, within CA265_RS03980 at 950.389 kb on + strand, within CA265_RS03980 at 950.401 kb on + strand, within CA265_RS03980 at 950.492 kb on + strand, within CA265_RS03980 at 950.493 kb on - strand, within CA265_RS03980 at 950.529 kb on + strand, within CA265_RS03980 at 950.530 kb on - strand, within CA265_RS03980 at 950.559 kb on + strand, within CA265_RS03980 at 950.605 kb on + strand, within CA265_RS03980 at 950.605 kb on + strand, within CA265_RS03980 at 950.605 kb on + strand, within CA265_RS03980 at 950.606 kb on - strand, within CA265_RS03980 at 950.606 kb on - strand, within CA265_RS03980 at 950.635 kb on + strand, within CA265_RS03980 at 950.635 kb on + strand, within CA265_RS03980 at 950.635 kb on + strand, within CA265_RS03980 at 950.637 kb on + strand, within CA265_RS03980 at 950.655 kb on - strand, within CA265_RS03980 at 950.675 kb on + strand, within CA265_RS03980 at 950.696 kb on - strand, within CA265_RS03980 at 950.785 kb on - strand, within CA265_RS03980 at 950.799 kb on - strand, within CA265_RS03980 at 950.847 kb on + strand, within CA265_RS03980 at 950.848 kb on - strand, within CA265_RS03980 at 950.883 kb on - strand, within CA265_RS03980 at 950.949 kb on + strand, within CA265_RS03980 at 950.950 kb on - strand, within CA265_RS03980 at 950.954 kb on - strand, within CA265_RS03980 at 950.954 kb on - strand, within CA265_RS03980 at 950.959 kb on - strand, within CA265_RS03980 at 950.959 kb on - strand, within CA265_RS03980 at 951.063 kb on + strand, within CA265_RS03980 at 951.063 kb on + strand, within CA265_RS03980 at 951.074 kb on + strand, within CA265_RS03980 at 951.136 kb on + strand, within CA265_RS03980 at 951.137 kb on - strand, within CA265_RS03980 at 951.161 kb on + strand at 951.162 kb on - strand at 951.162 kb on - strand at 951.171 kb on + strand at 951.213 kb on + strand at 951.230 kb on - strand at 951.230 kb on - strand at 951.240 kb on - strand at 951.243 kb on + strand at 951.251 kb on + strand at 951.297 kb on - strand at 951.309 kb on + strand at 951.310 kb on - strand at 951.487 kb on + strand at 951.487 kb on + strand at 951.488 kb on - strand at 951.493 kb on + strand at 951.502 kb on + strand at 951.636 kb on - strand, within CA265_RS03985 at 951.636 kb on - strand, within CA265_RS03985 at 951.637 kb on + strand, within CA265_RS03985 at 951.638 kb on - strand, within CA265_RS03985 at 951.638 kb on - strand, within CA265_RS03985 at 951.640 kb on + strand, within CA265_RS03985 at 951.650 kb on + strand, within CA265_RS03985 at 951.681 kb on + strand, within CA265_RS03985 at 951.696 kb on + strand, within CA265_RS03985 at 951.705 kb on + strand, within CA265_RS03985 at 951.712 kb on - strand, within CA265_RS03985 at 951.728 kb on - strand, within CA265_RS03985 at 951.790 kb on - strand, within CA265_RS03985 at 951.835 kb on + strand, within CA265_RS03985 at 951.836 kb on - strand, within CA265_RS03985 at 951.838 kb on - strand, within CA265_RS03985 at 951.838 kb on - strand, within CA265_RS03985 at 951.842 kb on - strand, within CA265_RS03985 at 951.842 kb on - strand at 951.842 kb on - strand, within CA265_RS03985 at 951.844 kb on - strand, within CA265_RS03985 at 951.886 kb on + strand, within CA265_RS03985 at 951.955 kb on - strand, within CA265_RS03985 at 952.021 kb on + strand, within CA265_RS03985 at 952.021 kb on + strand, within CA265_RS03985 at 952.039 kb on + strand, within CA265_RS03985 at 952.040 kb on - strand, within CA265_RS03985 at 952.072 kb on - strand, within CA265_RS03985 at 952.159 kb on + strand, within CA265_RS03985 at 952.188 kb on + strand, within CA265_RS03985 at 952.188 kb on + strand, within CA265_RS03985 at 952.189 kb on - strand, within CA265_RS03985 at 952.200 kb on + strand, within CA265_RS03985 at 952.240 kb on + strand, within CA265_RS03985 at 952.270 kb on + strand, within CA265_RS03985 at 952.270 kb on + strand, within CA265_RS03985 at 952.317 kb on - strand, within CA265_RS03985 at 952.333 kb on + strand, within CA265_RS03985 at 952.353 kb on + strand, within CA265_RS03985 at 952.388 kb on - strand, within CA265_RS03985 at 952.412 kb on - strand, within CA265_RS03985 at 952.414 kb on + strand, within CA265_RS03985 at 952.415 kb on - strand, within CA265_RS03985 at 952.436 kb on - strand, within CA265_RS03985 at 952.441 kb on - strand, within CA265_RS03985 at 952.478 kb on - strand, within CA265_RS03985 at 952.478 kb on - strand, within CA265_RS03985 at 952.481 kb on + strand, within CA265_RS03985 at 952.610 kb on + strand, within CA265_RS03985 at 952.611 kb on - strand, within CA265_RS03985 at 952.660 kb on + strand, within CA265_RS03985 at 952.669 kb on + strand, within CA265_RS03985 at 952.669 kb on + strand, within CA265_RS03985 at 952.742 kb on - strand, within CA265_RS03985 at 952.759 kb on - strand, within CA265_RS03985 at 952.812 kb on - strand at 952.853 kb on + strand, within CA265_RS03985 at 952.854 kb on - strand, within CA265_RS03985 at 952.856 kb on - strand, within CA265_RS03985 at 952.859 kb on - strand, within CA265_RS03985 at 952.917 kb on + strand, within CA265_RS03985 at 952.929 kb on + strand, within CA265_RS03985 at 952.955 kb on - strand, within CA265_RS03985 at 952.992 kb on - strand, within CA265_RS03985 at 953.041 kb on + strand, within CA265_RS03985 at 953.049 kb on + strand, within CA265_RS03985 at 953.050 kb on - strand, within CA265_RS03985 at 953.084 kb on + strand, within CA265_RS03985 at 953.088 kb on + strand, within CA265_RS03985 at 953.089 kb on - strand, within CA265_RS03985 at 953.089 kb on - strand, within CA265_RS03985 at 953.097 kb on + strand at 953.202 kb on + strand at 953.202 kb on + strand at 953.249 kb on - strand at 953.252 kb on + strand at 953.252 kb on + strand at 953.253 kb on - strand at 953.257 kb on + strand at 953.258 kb on - strand at 953.321 kb on + strand at 953.325 kb on + strand at 953.330 kb on + strand at 953.330 kb on + strand at 953.330 kb on + strand at 953.454 kb on + strand at 953.505 kb on + strand, within CA265_RS03990 at 953.539 kb on + strand, within CA265_RS03990 at 953.545 kb on - strand, within CA265_RS03990 at 953.589 kb on - strand, within CA265_RS03990 at 953.595 kb on + strand, within CA265_RS03990 at 953.655 kb on + strand, within CA265_RS03990 at 953.680 kb on + strand, within CA265_RS03990 at 953.681 kb on - strand, within CA265_RS03990 at 953.691 kb on - strand, within CA265_RS03990 at 953.758 kb on - strand, within CA265_RS03990 at 953.762 kb on - strand, within CA265_RS03990 at 953.769 kb on + strand, within CA265_RS03990 at 953.770 kb on - strand, within CA265_RS03990 at 953.829 kb on + strand, within CA265_RS03990 at 953.852 kb on + strand, within CA265_RS03990 at 953.882 kb on + strand, within CA265_RS03990 at 953.882 kb on + strand, within CA265_RS03990 at 953.908 kb on + strand, within CA265_RS03990 at 953.929 kb on + strand, within CA265_RS03990 at 954.084 kb on - strand, within CA265_RS03990 at 954.084 kb on - strand, within CA265_RS03990 at 954.085 kb on + strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.086 kb on - strand, within CA265_RS03990 at 954.130 kb on - strand, within CA265_RS03990 at 954.132 kb on + strand, within CA265_RS03990 at 954.151 kb on - strand, within CA265_RS03990 at 954.270 kb on - strand, within CA265_RS03990 at 954.274 kb on - strand, within CA265_RS03990 at 954.287 kb on + strand, within CA265_RS03990
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 950,359 - CA265_RS03980 0.45 -0.5 950,386 - CA265_RS03980 0.47 -1.7 950,389 + CA265_RS03980 0.47 -1.5 950,389 + CA265_RS03980 0.47 -0.6 950,401 + CA265_RS03980 0.48 -0.1 950,492 + CA265_RS03980 0.53 +0.3 950,493 - CA265_RS03980 0.53 +0.2 950,529 + CA265_RS03980 0.55 +0.3 950,530 - CA265_RS03980 0.55 -1.7 950,559 + CA265_RS03980 0.57 +0.9 950,605 + CA265_RS03980 0.59 +0.2 950,605 + CA265_RS03980 0.59 -0.6 950,605 + CA265_RS03980 0.59 -0.7 950,606 - CA265_RS03980 0.59 -0.5 950,606 - CA265_RS03980 0.59 +0.4 950,635 + CA265_RS03980 0.61 +2.0 950,635 + CA265_RS03980 0.61 -0.6 950,635 + CA265_RS03980 0.61 +0.3 950,637 + CA265_RS03980 0.61 -2.5 950,655 - CA265_RS03980 0.62 -0.7 950,675 + CA265_RS03980 0.63 -1.8 950,696 - CA265_RS03980 0.65 +0.3 950,785 - CA265_RS03980 0.70 -1.9 950,799 - CA265_RS03980 0.70 -0.4 950,847 + CA265_RS03980 0.73 -1.7 950,848 - CA265_RS03980 0.73 -0.5 950,883 - CA265_RS03980 0.75 -1.1 950,949 + CA265_RS03980 0.79 +0.1 950,950 - CA265_RS03980 0.79 -0.2 950,954 - CA265_RS03980 0.79 +0.5 950,954 - CA265_RS03980 0.79 +0.9 950,959 - CA265_RS03980 0.80 -1.7 950,959 - CA265_RS03980 0.80 -1.0 951,063 + CA265_RS03980 0.86 -0.0 951,063 + CA265_RS03980 0.86 -2.1 951,074 + CA265_RS03980 0.86 -1.9 951,136 + CA265_RS03980 0.90 +0.7 951,137 - CA265_RS03980 0.90 +1.6 951,161 + -0.1 951,162 - -0.4 951,162 - -0.6 951,171 + -0.1 951,213 + -1.4 951,230 - -0.3 951,230 - -0.1 951,240 - -0.0 951,243 + -1.7 951,251 + -0.3 951,297 - -0.3 951,309 + -0.5 951,310 - -1.4 951,487 + +0.3 951,487 + -0.7 951,488 - -1.5 951,493 + +0.5 951,502 + +0.7 951,636 - CA265_RS03985 0.16 +0.8 951,636 - CA265_RS03985 0.16 +0.1 951,637 + CA265_RS03985 0.16 +0.1 951,638 - CA265_RS03985 0.16 -0.3 951,638 - CA265_RS03985 0.16 +1.7 951,640 + CA265_RS03985 0.16 +0.4 951,650 + CA265_RS03985 0.16 -0.2 951,681 + CA265_RS03985 0.18 -0.7 951,696 + CA265_RS03985 0.19 +0.3 951,705 + CA265_RS03985 0.19 -0.6 951,712 - CA265_RS03985 0.19 -1.6 951,728 - CA265_RS03985 0.20 -0.7 951,790 - CA265_RS03985 0.23 +0.1 951,835 + CA265_RS03985 0.26 -0.5 951,836 - CA265_RS03985 0.26 +0.2 951,838 - CA265_RS03985 0.26 -1.3 951,838 - CA265_RS03985 0.26 -0.1 951,842 - CA265_RS03985 0.26 -0.6 951,842 - +1.0 951,842 - CA265_RS03985 0.26 -0.1 951,844 - CA265_RS03985 0.26 +1.1 951,886 + CA265_RS03985 0.28 +0.3 951,955 - CA265_RS03985 0.32 +0.0 952,021 + CA265_RS03985 0.35 +0.1 952,021 + CA265_RS03985 0.35 -1.7 952,039 + CA265_RS03985 0.36 +0.2 952,040 - CA265_RS03985 0.36 -0.9 952,072 - CA265_RS03985 0.38 -0.4 952,159 + CA265_RS03985 0.42 -1.1 952,188 + CA265_RS03985 0.44 -0.3 952,188 + CA265_RS03985 0.44 +0.3 952,189 - CA265_RS03985 0.44 -0.1 952,200 + CA265_RS03985 0.44 +1.3 952,240 + CA265_RS03985 0.46 +0.7 952,270 + CA265_RS03985 0.48 +0.2 952,270 + CA265_RS03985 0.48 -0.1 952,317 - CA265_RS03985 0.50 +1.0 952,333 + CA265_RS03985 0.51 -0.0 952,353 + CA265_RS03985 0.52 +0.2 952,388 - CA265_RS03985 0.54 -2.8 952,412 - CA265_RS03985 0.55 -1.5 952,414 + CA265_RS03985 0.55 -0.9 952,415 - CA265_RS03985 0.55 -0.4 952,436 - CA265_RS03985 0.56 +0.2 952,441 - CA265_RS03985 0.57 -0.3 952,478 - CA265_RS03985 0.58 -1.0 952,478 - CA265_RS03985 0.58 -0.0 952,481 + CA265_RS03985 0.59 +0.8 952,610 + CA265_RS03985 0.65 -1.2 952,611 - CA265_RS03985 0.65 +0.2 952,660 + CA265_RS03985 0.68 +1.7 952,669 + CA265_RS03985 0.68 +1.2 952,669 + CA265_RS03985 0.68 +0.1 952,742 - CA265_RS03985 0.72 -0.4 952,759 - CA265_RS03985 0.73 +0.2 952,812 - +1.6 952,853 + CA265_RS03985 0.78 -0.3 952,854 - CA265_RS03985 0.78 -0.9 952,856 - CA265_RS03985 0.78 +0.3 952,859 - CA265_RS03985 0.78 -0.7 952,917 + CA265_RS03985 0.81 -0.6 952,929 + CA265_RS03985 0.82 +0.2 952,955 - CA265_RS03985 0.83 -0.7 952,992 - CA265_RS03985 0.85 -2.1 953,041 + CA265_RS03985 0.87 +0.3 953,049 + CA265_RS03985 0.88 +1.0 953,050 - CA265_RS03985 0.88 +0.4 953,084 + CA265_RS03985 0.89 -1.0 953,088 + CA265_RS03985 0.90 +0.1 953,089 - CA265_RS03985 0.90 +0.2 953,089 - CA265_RS03985 0.90 +0.2 953,097 + -0.3 953,202 + -0.1 953,202 + -0.4 953,249 - -0.2 953,252 + +1.6 953,252 + +0.6 953,253 - +0.2 953,257 + -0.0 953,258 - +0.5 953,321 + -0.3 953,325 + +0.5 953,330 + -0.6 953,330 + -1.1 953,330 + -0.9 953,454 + -1.9 953,505 + CA265_RS03990 0.13 +0.6 953,539 + CA265_RS03990 0.15 +0.3 953,545 - CA265_RS03990 0.15 +0.5 953,589 - CA265_RS03990 0.18 -0.3 953,595 + CA265_RS03990 0.18 +0.1 953,655 + CA265_RS03990 0.21 +0.1 953,680 + CA265_RS03990 0.23 +0.2 953,681 - CA265_RS03990 0.23 +0.8 953,691 - CA265_RS03990 0.24 -0.2 953,758 - CA265_RS03990 0.28 -0.8 953,762 - CA265_RS03990 0.28 +0.4 953,769 + CA265_RS03990 0.28 -2.0 953,770 - CA265_RS03990 0.28 -0.6 953,829 + CA265_RS03990 0.32 -0.5 953,852 + CA265_RS03990 0.33 -0.2 953,882 + CA265_RS03990 0.35 +0.2 953,882 + CA265_RS03990 0.35 -1.1 953,908 + CA265_RS03990 0.36 -2.8 953,929 + CA265_RS03990 0.38 +0.2 954,084 - CA265_RS03990 0.47 +0.0 954,084 - CA265_RS03990 0.47 -1.2 954,085 + CA265_RS03990 0.47 -0.1 954,086 - CA265_RS03990 0.47 -0.1 954,086 - CA265_RS03990 0.47 +1.2 954,086 - CA265_RS03990 0.47 +0.0 954,086 - CA265_RS03990 0.47 +0.3 954,130 - CA265_RS03990 0.49 +0.4 954,132 + CA265_RS03990 0.50 +0.3 954,151 - CA265_RS03990 0.51 +0.6 954,270 - CA265_RS03990 0.58 +1.6 954,274 - CA265_RS03990 0.58 -0.3 954,287 + CA265_RS03990 0.59 +0.4
Or see this region's nucleotide sequence