Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03965 and CA265_RS03970 are separated by 72 nucleotides CA265_RS03970 and CA265_RS03975 are separated by 30 nucleotides CA265_RS03975 and CA265_RS03980 are separated by 20 nucleotides
CA265_RS03965: CA265_RS03965 - hypothetical protein, at 945,485 to 947,026
_RS03965
CA265_RS03970: CA265_RS03970 - hypothetical protein, at 947,099 to 947,842
_RS03970
CA265_RS03975: CA265_RS03975 - hypothetical protein, at 947,873 to 949,546
_RS03975
CA265_RS03980: CA265_RS03980 - hypothetical protein, at 949,567 to 951,315
_RS03980
Position (kb) 947
948
949
950 Strain fitness (log2 ratio) -2
-1
0
1
2 at 946.918 kb on + strand at 946.970 kb on - strand at 946.998 kb on - strand at 947.025 kb on - strand at 947.027 kb on + strand at 947.079 kb on - strand at 947.079 kb on - strand at 947.091 kb on - strand at 947.093 kb on - strand at 947.093 kb on - strand at 947.093 kb on - strand at 947.113 kb on + strand at 947.140 kb on + strand at 947.164 kb on + strand at 947.171 kb on + strand at 947.205 kb on - strand, within CA265_RS03970 at 947.217 kb on + strand, within CA265_RS03970 at 947.218 kb on - strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.225 kb on + strand, within CA265_RS03970 at 947.227 kb on + strand, within CA265_RS03970 at 947.273 kb on - strand, within CA265_RS03970 at 947.277 kb on + strand, within CA265_RS03970 at 947.345 kb on + strand, within CA265_RS03970 at 947.356 kb on + strand, within CA265_RS03970 at 947.371 kb on - strand, within CA265_RS03970 at 947.441 kb on - strand, within CA265_RS03970 at 947.442 kb on + strand, within CA265_RS03970 at 947.511 kb on - strand, within CA265_RS03970 at 947.543 kb on + strand, within CA265_RS03970 at 947.543 kb on + strand, within CA265_RS03970 at 947.590 kb on - strand, within CA265_RS03970 at 947.595 kb on - strand, within CA265_RS03970 at 947.661 kb on - strand, within CA265_RS03970 at 947.725 kb on - strand, within CA265_RS03970 at 947.725 kb on - strand, within CA265_RS03970 at 947.725 kb on - strand, within CA265_RS03970 at 947.790 kb on - strand at 947.841 kb on - strand at 947.841 kb on - strand at 947.849 kb on - strand at 948.010 kb on + strand at 948.095 kb on - strand, within CA265_RS03975 at 948.113 kb on + strand, within CA265_RS03975 at 948.113 kb on + strand, within CA265_RS03975 at 948.143 kb on - strand, within CA265_RS03975 at 948.187 kb on + strand, within CA265_RS03975 at 948.205 kb on + strand, within CA265_RS03975 at 948.205 kb on + strand, within CA265_RS03975 at 948.267 kb on + strand, within CA265_RS03975 at 948.267 kb on + strand, within CA265_RS03975 at 948.274 kb on - strand, within CA265_RS03975 at 948.281 kb on - strand, within CA265_RS03975 at 948.292 kb on - strand, within CA265_RS03975 at 948.333 kb on - strand, within CA265_RS03975 at 948.338 kb on - strand, within CA265_RS03975 at 948.340 kb on - strand, within CA265_RS03975 at 948.363 kb on - strand, within CA265_RS03975 at 948.369 kb on + strand, within CA265_RS03975 at 948.421 kb on - strand, within CA265_RS03975 at 948.438 kb on + strand, within CA265_RS03975 at 948.455 kb on + strand, within CA265_RS03975 at 948.456 kb on - strand, within CA265_RS03975 at 948.458 kb on - strand, within CA265_RS03975 at 948.506 kb on + strand, within CA265_RS03975 at 948.520 kb on + strand, within CA265_RS03975 at 948.539 kb on - strand, within CA265_RS03975 at 948.568 kb on + strand, within CA265_RS03975 at 948.590 kb on - strand, within CA265_RS03975 at 948.613 kb on - strand, within CA265_RS03975 at 948.652 kb on + strand, within CA265_RS03975 at 948.673 kb on + strand, within CA265_RS03975 at 948.674 kb on - strand, within CA265_RS03975 at 948.674 kb on - strand, within CA265_RS03975 at 948.794 kb on - strand, within CA265_RS03975 at 948.794 kb on - strand, within CA265_RS03975 at 948.799 kb on + strand, within CA265_RS03975 at 948.799 kb on + strand, within CA265_RS03975 at 948.800 kb on - strand, within CA265_RS03975 at 948.803 kb on - strand, within CA265_RS03975 at 948.818 kb on + strand, within CA265_RS03975 at 948.889 kb on + strand, within CA265_RS03975 at 948.898 kb on + strand, within CA265_RS03975 at 948.899 kb on - strand, within CA265_RS03975 at 948.899 kb on - strand, within CA265_RS03975 at 948.920 kb on + strand, within CA265_RS03975 at 948.970 kb on - strand, within CA265_RS03975 at 948.976 kb on + strand, within CA265_RS03975 at 949.035 kb on + strand, within CA265_RS03975 at 949.036 kb on - strand, within CA265_RS03975 at 949.036 kb on - strand at 949.036 kb on - strand, within CA265_RS03975 at 949.066 kb on - strand, within CA265_RS03975 at 949.066 kb on - strand, within CA265_RS03975 at 949.077 kb on + strand, within CA265_RS03975 at 949.117 kb on + strand, within CA265_RS03975 at 949.117 kb on + strand, within CA265_RS03975 at 949.142 kb on - strand, within CA265_RS03975 at 949.142 kb on - strand, within CA265_RS03975 at 949.232 kb on - strand, within CA265_RS03975 at 949.241 kb on - strand, within CA265_RS03975 at 949.241 kb on - strand, within CA265_RS03975 at 949.273 kb on - strand, within CA265_RS03975 at 949.273 kb on - strand, within CA265_RS03975 at 949.277 kb on - strand, within CA265_RS03975 at 949.294 kb on + strand, within CA265_RS03975 at 949.365 kb on + strand, within CA265_RS03975 at 949.400 kb on - strand at 949.400 kb on - strand at 949.423 kb on + strand at 949.486 kb on + strand at 949.510 kb on - strand at 949.566 kb on - strand at 949.566 kb on - strand at 949.593 kb on - strand at 949.596 kb on + strand at 949.638 kb on + strand at 949.645 kb on - strand at 949.738 kb on + strand at 949.739 kb on - strand at 949.739 kb on - strand at 949.739 kb on - strand at 949.803 kb on + strand, within CA265_RS03980 at 949.820 kb on + strand, within CA265_RS03980 at 949.821 kb on - strand, within CA265_RS03980 at 949.825 kb on - strand, within CA265_RS03980 at 949.884 kb on + strand, within CA265_RS03980 at 949.884 kb on + strand, within CA265_RS03980 at 949.887 kb on + strand, within CA265_RS03980 at 949.887 kb on + strand, within CA265_RS03980 at 949.926 kb on + strand, within CA265_RS03980 at 950.111 kb on + strand, within CA265_RS03980 at 950.120 kb on + strand, within CA265_RS03980 at 950.121 kb on - strand, within CA265_RS03980 at 950.130 kb on + strand, within CA265_RS03980 at 950.213 kb on - strand, within CA265_RS03980 at 950.242 kb on + strand, within CA265_RS03980 at 950.242 kb on + strand, within CA265_RS03980 at 950.243 kb on - strand, within CA265_RS03980 at 950.268 kb on - strand, within CA265_RS03980 at 950.319 kb on + strand, within CA265_RS03980 at 950.319 kb on + strand, within CA265_RS03980 at 950.359 kb on - strand, within CA265_RS03980 at 950.386 kb on - strand, within CA265_RS03980 at 950.389 kb on + strand, within CA265_RS03980 at 950.389 kb on + strand, within CA265_RS03980 at 950.401 kb on + strand, within CA265_RS03980 at 950.492 kb on + strand, within CA265_RS03980 at 950.493 kb on - strand, within CA265_RS03980 at 950.529 kb on + strand, within CA265_RS03980 at 950.530 kb on - strand, within CA265_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 946,918 + -0.0 946,970 - +0.6 946,998 - -1.1 947,025 - -0.7 947,027 + +0.9 947,079 - -0.2 947,079 - -0.3 947,091 - -1.0 947,093 - -0.5 947,093 - -0.8 947,093 - -0.6 947,113 + -0.4 947,140 + +1.0 947,164 + -1.5 947,171 + -1.7 947,205 - CA265_RS03970 0.14 -0.8 947,217 + CA265_RS03970 0.16 -0.9 947,218 - CA265_RS03970 0.16 -0.1 947,225 + CA265_RS03970 0.17 +0.6 947,225 + CA265_RS03970 0.17 +0.8 947,225 + CA265_RS03970 0.17 -0.1 947,225 + CA265_RS03970 0.17 -1.0 947,227 + CA265_RS03970 0.17 -0.5 947,273 - CA265_RS03970 0.23 +0.4 947,277 + CA265_RS03970 0.24 -1.4 947,345 + CA265_RS03970 0.33 +0.7 947,356 + CA265_RS03970 0.35 +0.2 947,371 - CA265_RS03970 0.37 -0.5 947,441 - CA265_RS03970 0.46 -0.1 947,442 + CA265_RS03970 0.46 -1.0 947,511 - CA265_RS03970 0.55 +0.8 947,543 + CA265_RS03970 0.60 -0.2 947,543 + CA265_RS03970 0.60 -0.7 947,590 - CA265_RS03970 0.66 -0.2 947,595 - CA265_RS03970 0.67 -0.1 947,661 - CA265_RS03970 0.76 +0.5 947,725 - CA265_RS03970 0.84 -0.4 947,725 - CA265_RS03970 0.84 -0.8 947,725 - CA265_RS03970 0.84 -1.1 947,790 - +0.6 947,841 - +0.3 947,841 - +0.0 947,849 - +0.3 948,010 + -1.1 948,095 - CA265_RS03975 0.13 -0.4 948,113 + CA265_RS03975 0.14 +1.8 948,113 + CA265_RS03975 0.14 +0.9 948,143 - CA265_RS03975 0.16 -0.4 948,187 + CA265_RS03975 0.19 -1.2 948,205 + CA265_RS03975 0.20 -0.1 948,205 + CA265_RS03975 0.20 -0.2 948,267 + CA265_RS03975 0.24 -0.7 948,267 + CA265_RS03975 0.24 -0.6 948,274 - CA265_RS03975 0.24 +0.9 948,281 - CA265_RS03975 0.24 +2.6 948,292 - CA265_RS03975 0.25 +0.4 948,333 - CA265_RS03975 0.27 -0.8 948,338 - CA265_RS03975 0.28 +1.3 948,340 - CA265_RS03975 0.28 +1.9 948,363 - CA265_RS03975 0.29 -1.0 948,369 + CA265_RS03975 0.30 -0.9 948,421 - CA265_RS03975 0.33 -0.4 948,438 + CA265_RS03975 0.34 -2.1 948,455 + CA265_RS03975 0.35 -1.0 948,456 - CA265_RS03975 0.35 -1.5 948,458 - CA265_RS03975 0.35 -1.2 948,506 + CA265_RS03975 0.38 -1.2 948,520 + CA265_RS03975 0.39 -1.5 948,539 - CA265_RS03975 0.40 +0.7 948,568 + CA265_RS03975 0.42 -0.3 948,590 - CA265_RS03975 0.43 +0.2 948,613 - CA265_RS03975 0.44 +0.0 948,652 + CA265_RS03975 0.47 -1.5 948,673 + CA265_RS03975 0.48 -0.7 948,674 - CA265_RS03975 0.48 -0.2 948,674 - CA265_RS03975 0.48 -0.9 948,794 - CA265_RS03975 0.55 -0.5 948,794 - CA265_RS03975 0.55 -1.1 948,799 + CA265_RS03975 0.55 +0.3 948,799 + CA265_RS03975 0.55 +1.3 948,800 - CA265_RS03975 0.55 +0.5 948,803 - CA265_RS03975 0.56 -1.2 948,818 + CA265_RS03975 0.56 -1.4 948,889 + CA265_RS03975 0.61 +0.3 948,898 + CA265_RS03975 0.61 -0.5 948,899 - CA265_RS03975 0.61 -0.5 948,899 - CA265_RS03975 0.61 -0.9 948,920 + CA265_RS03975 0.63 -0.5 948,970 - CA265_RS03975 0.66 -0.7 948,976 + CA265_RS03975 0.66 -0.4 949,035 + CA265_RS03975 0.69 -0.5 949,036 - CA265_RS03975 0.69 -0.9 949,036 - +1.0 949,036 - CA265_RS03975 0.69 -1.4 949,066 - CA265_RS03975 0.71 -0.2 949,066 - CA265_RS03975 0.71 -1.4 949,077 + CA265_RS03975 0.72 -0.0 949,117 + CA265_RS03975 0.74 -1.1 949,117 + CA265_RS03975 0.74 -1.3 949,142 - CA265_RS03975 0.76 -0.6 949,142 - CA265_RS03975 0.76 +0.3 949,232 - CA265_RS03975 0.81 -0.2 949,241 - CA265_RS03975 0.82 +0.2 949,241 - CA265_RS03975 0.82 -0.2 949,273 - CA265_RS03975 0.84 -0.6 949,273 - CA265_RS03975 0.84 +1.1 949,277 - CA265_RS03975 0.84 +1.7 949,294 + CA265_RS03975 0.85 -1.0 949,365 + CA265_RS03975 0.89 -0.1 949,400 - +0.7 949,400 - +0.2 949,423 + -1.5 949,486 + -1.0 949,510 - -0.2 949,566 - -0.0 949,566 - +0.5 949,593 - +0.2 949,596 + -0.1 949,638 + -0.2 949,645 - -0.0 949,738 + +2.2 949,739 - -0.2 949,739 - -0.2 949,739 - -1.1 949,803 + CA265_RS03980 0.13 -0.5 949,820 + CA265_RS03980 0.14 +0.1 949,821 - CA265_RS03980 0.15 -0.5 949,825 - CA265_RS03980 0.15 -1.6 949,884 + CA265_RS03980 0.18 -1.3 949,884 + CA265_RS03980 0.18 +0.1 949,887 + CA265_RS03980 0.18 +0.8 949,887 + CA265_RS03980 0.18 -1.1 949,926 + CA265_RS03980 0.21 +0.5 950,111 + CA265_RS03980 0.31 +1.0 950,120 + CA265_RS03980 0.32 -0.2 950,121 - CA265_RS03980 0.32 +0.2 950,130 + CA265_RS03980 0.32 -0.5 950,213 - CA265_RS03980 0.37 +0.6 950,242 + CA265_RS03980 0.39 -0.3 950,242 + CA265_RS03980 0.39 -0.9 950,243 - CA265_RS03980 0.39 -0.1 950,268 - CA265_RS03980 0.40 -0.0 950,319 + CA265_RS03980 0.43 -0.5 950,319 + CA265_RS03980 0.43 +0.1 950,359 - CA265_RS03980 0.45 -0.5 950,386 - CA265_RS03980 0.47 -1.7 950,389 + CA265_RS03980 0.47 -1.5 950,389 + CA265_RS03980 0.47 -0.6 950,401 + CA265_RS03980 0.48 -0.1 950,492 + CA265_RS03980 0.53 +0.3 950,493 - CA265_RS03980 0.53 +0.2 950,529 + CA265_RS03980 0.55 +0.3 950,530 - CA265_RS03980 0.55 -1.7
Or see this region's nucleotide sequence