Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03690 and CA265_RS03695 are separated by 58 nucleotides CA265_RS03695 and CA265_RS03700 are separated by 40 nucleotides CA265_RS03700 and CA265_RS03705 are separated by 207 nucleotides
CA265_RS03690: CA265_RS03690 - nicotinate phosphoribosyltransferase, at 877,986 to 879,443
_RS03690
CA265_RS03695: CA265_RS03695 - hypothetical protein, at 879,502 to 879,906
_RS03695
CA265_RS03700: CA265_RS03700 - hypothetical protein, at 879,947 to 880,477
_RS03700
CA265_RS03705: CA265_RS03705 - hypothetical protein, at 880,685 to 882,724
_RS03705
Position (kb) 879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 878.966 kb on - strand, within CA265_RS03690 at 878.966 kb on - strand, within CA265_RS03690 at 878.987 kb on - strand, within CA265_RS03690 at 879.002 kb on + strand, within CA265_RS03690 at 879.003 kb on - strand, within CA265_RS03690 at 879.056 kb on + strand, within CA265_RS03690 at 879.057 kb on - strand, within CA265_RS03690 at 879.060 kb on - strand, within CA265_RS03690 at 879.060 kb on - strand, within CA265_RS03690 at 879.119 kb on + strand, within CA265_RS03690 at 879.120 kb on - strand, within CA265_RS03690 at 879.150 kb on - strand, within CA265_RS03690 at 879.164 kb on + strand, within CA265_RS03690 at 879.201 kb on + strand, within CA265_RS03690 at 879.201 kb on + strand, within CA265_RS03690 at 879.202 kb on - strand, within CA265_RS03690 at 879.202 kb on - strand, within CA265_RS03690 at 879.202 kb on - strand, within CA265_RS03690 at 879.211 kb on + strand, within CA265_RS03690 at 879.315 kb on + strand at 879.391 kb on + strand at 879.391 kb on + strand at 879.403 kb on - strand at 879.485 kb on + strand at 879.498 kb on + strand at 879.543 kb on - strand, within CA265_RS03695 at 879.562 kb on - strand, within CA265_RS03695 at 879.563 kb on + strand, within CA265_RS03695 at 879.585 kb on + strand, within CA265_RS03695 at 879.586 kb on - strand, within CA265_RS03695 at 879.586 kb on - strand, within CA265_RS03695 at 879.618 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.697 kb on + strand, within CA265_RS03695 at 879.698 kb on - strand, within CA265_RS03695 at 879.720 kb on + strand, within CA265_RS03695 at 879.835 kb on - strand, within CA265_RS03695 at 879.855 kb on + strand, within CA265_RS03695 at 879.855 kb on + strand, within CA265_RS03695 at 879.856 kb on - strand, within CA265_RS03695 at 879.978 kb on + strand at 879.994 kb on + strand at 880.034 kb on + strand, within CA265_RS03700 at 880.035 kb on - strand, within CA265_RS03700 at 880.036 kb on + strand, within CA265_RS03700 at 880.036 kb on + strand, within CA265_RS03700 at 880.038 kb on + strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.039 kb on - strand, within CA265_RS03700 at 880.093 kb on + strand, within CA265_RS03700 at 880.127 kb on + strand, within CA265_RS03700 at 880.142 kb on - strand, within CA265_RS03700 at 880.183 kb on + strand, within CA265_RS03700 at 880.188 kb on + strand, within CA265_RS03700 at 880.188 kb on + strand, within CA265_RS03700 at 880.195 kb on + strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.196 kb on - strand, within CA265_RS03700 at 880.206 kb on - strand, within CA265_RS03700 at 880.208 kb on - strand, within CA265_RS03700 at 880.227 kb on + strand, within CA265_RS03700 at 880.228 kb on - strand, within CA265_RS03700 at 880.298 kb on + strand, within CA265_RS03700 at 880.418 kb on + strand, within CA265_RS03700 at 880.419 kb on - strand, within CA265_RS03700 at 880.441 kb on - strand at 880.598 kb on + strand at 880.612 kb on - strand at 880.618 kb on + strand at 880.633 kb on + strand at 880.723 kb on - strand at 880.753 kb on - strand at 880.781 kb on + strand at 880.914 kb on - strand, within CA265_RS03705 at 880.955 kb on - strand, within CA265_RS03705 at 880.956 kb on + strand, within CA265_RS03705 at 880.968 kb on - strand, within CA265_RS03705 at 880.983 kb on - strand, within CA265_RS03705 at 880.988 kb on - strand, within CA265_RS03705 at 881.086 kb on - strand, within CA265_RS03705 at 881.088 kb on + strand, within CA265_RS03705 at 881.088 kb on + strand, within CA265_RS03705 at 881.216 kb on - strand, within CA265_RS03705 at 881.237 kb on - strand, within CA265_RS03705 at 881.240 kb on + strand, within CA265_RS03705 at 881.240 kb on + strand, within CA265_RS03705 at 881.241 kb on - strand, within CA265_RS03705 at 881.288 kb on - strand, within CA265_RS03705 at 881.353 kb on + strand, within CA265_RS03705 at 881.354 kb on - strand, within CA265_RS03705 at 881.361 kb on + strand, within CA265_RS03705 at 881.362 kb on - strand, within CA265_RS03705 at 881.416 kb on - strand, within CA265_RS03705 at 881.421 kb on + strand, within CA265_RS03705 at 881.476 kb on + strand, within CA265_RS03705
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 878,966 - CA265_RS03690 0.67 +0.9 878,966 - CA265_RS03690 0.67 +1.4 878,987 - CA265_RS03690 0.69 -2.1 879,002 + CA265_RS03690 0.70 -0.4 879,003 - CA265_RS03690 0.70 -0.1 879,056 + CA265_RS03690 0.73 -1.4 879,057 - CA265_RS03690 0.73 -0.2 879,060 - CA265_RS03690 0.74 -0.4 879,060 - CA265_RS03690 0.74 +0.8 879,119 + CA265_RS03690 0.78 -0.5 879,120 - CA265_RS03690 0.78 +0.3 879,150 - CA265_RS03690 0.80 +0.0 879,164 + CA265_RS03690 0.81 +0.4 879,201 + CA265_RS03690 0.83 +0.5 879,201 + CA265_RS03690 0.83 +0.2 879,202 - CA265_RS03690 0.83 -3.6 879,202 - CA265_RS03690 0.83 +1.1 879,202 - CA265_RS03690 0.83 -0.3 879,211 + CA265_RS03690 0.84 -1.4 879,315 + +0.7 879,391 + +0.7 879,391 + +0.6 879,403 - -1.4 879,485 + -0.5 879,498 + -1.2 879,543 - CA265_RS03695 0.10 -0.4 879,562 - CA265_RS03695 0.15 -1.5 879,563 + CA265_RS03695 0.15 -0.0 879,585 + CA265_RS03695 0.20 +2.6 879,586 - CA265_RS03695 0.21 -0.8 879,586 - CA265_RS03695 0.21 -1.2 879,618 + CA265_RS03695 0.29 +0.6 879,697 + CA265_RS03695 0.48 -1.5 879,697 + CA265_RS03695 0.48 -1.3 879,697 + CA265_RS03695 0.48 -0.7 879,698 - CA265_RS03695 0.48 -0.5 879,720 + CA265_RS03695 0.54 -0.3 879,835 - CA265_RS03695 0.82 -1.4 879,855 + CA265_RS03695 0.87 -0.4 879,855 + CA265_RS03695 0.87 -0.8 879,856 - CA265_RS03695 0.87 -0.6 879,978 + -1.1 879,994 + +1.3 880,034 + CA265_RS03700 0.16 +0.1 880,035 - CA265_RS03700 0.17 +0.9 880,036 + CA265_RS03700 0.17 -0.1 880,036 + CA265_RS03700 0.17 +0.2 880,038 + CA265_RS03700 0.17 +0.1 880,039 - CA265_RS03700 0.17 -1.3 880,039 - CA265_RS03700 0.17 -1.0 880,039 - CA265_RS03700 0.17 -0.2 880,093 + CA265_RS03700 0.27 -0.5 880,127 + CA265_RS03700 0.34 -0.8 880,142 - CA265_RS03700 0.37 +0.3 880,183 + CA265_RS03700 0.44 -0.7 880,188 + CA265_RS03700 0.45 +0.8 880,188 + CA265_RS03700 0.45 +0.7 880,195 + CA265_RS03700 0.47 -1.8 880,196 - CA265_RS03700 0.47 -2.7 880,196 - CA265_RS03700 0.47 -0.7 880,196 - CA265_RS03700 0.47 -0.7 880,206 - CA265_RS03700 0.49 -0.1 880,208 - CA265_RS03700 0.49 -1.9 880,227 + CA265_RS03700 0.53 -0.0 880,228 - CA265_RS03700 0.53 -0.6 880,298 + CA265_RS03700 0.66 -0.2 880,418 + CA265_RS03700 0.89 +1.3 880,419 - CA265_RS03700 0.89 -0.2 880,441 - -0.4 880,598 + -0.8 880,612 - +0.0 880,618 + +0.8 880,633 + +0.2 880,723 - -0.4 880,753 - +1.0 880,781 + -0.3 880,914 - CA265_RS03705 0.11 -1.1 880,955 - CA265_RS03705 0.13 -0.2 880,956 + CA265_RS03705 0.13 +0.8 880,968 - CA265_RS03705 0.14 -1.9 880,983 - CA265_RS03705 0.15 +0.2 880,988 - CA265_RS03705 0.15 -0.5 881,086 - CA265_RS03705 0.20 +0.6 881,088 + CA265_RS03705 0.20 +0.3 881,088 + CA265_RS03705 0.20 -0.8 881,216 - CA265_RS03705 0.26 +0.3 881,237 - CA265_RS03705 0.27 +0.3 881,240 + CA265_RS03705 0.27 +0.1 881,240 + CA265_RS03705 0.27 -1.0 881,241 - CA265_RS03705 0.27 -0.2 881,288 - CA265_RS03705 0.30 +0.3 881,353 + CA265_RS03705 0.33 -1.2 881,354 - CA265_RS03705 0.33 -0.6 881,361 + CA265_RS03705 0.33 -0.8 881,362 - CA265_RS03705 0.33 +0.6 881,416 - CA265_RS03705 0.36 -1.6 881,421 + CA265_RS03705 0.36 +0.6 881,476 + CA265_RS03705 0.39 -0.2
Or see this region's nucleotide sequence