Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS03290

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS03285 and CA265_RS03290 are separated by 246 nucleotidesCA265_RS03290 and CA265_RS03295 overlap by 1 nucleotides CA265_RS03285: CA265_RS03285 - hypothetical protein, at 802,630 to 803,361 _RS03285 CA265_RS03290: CA265_RS03290 - gliding motility-associated ABC transporter permease subunit GldF, at 803,608 to 804,333 _RS03290 CA265_RS03295: CA265_RS03295 - gliding motility-associated ABC transporter substrate-binding protein GldG, at 804,333 to 806,018 _RS03295 Position (kb) 803 804 805Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 802.672 kb on - strandat 802.688 kb on + strandat 802.692 kb on - strandat 802.763 kb on + strand, within CA265_RS03285at 802.820 kb on - strand, within CA265_RS03285at 802.822 kb on - strand, within CA265_RS03285at 802.836 kb on + strand, within CA265_RS03285at 802.866 kb on + strand, within CA265_RS03285at 802.883 kb on + strand, within CA265_RS03285at 802.904 kb on + strand, within CA265_RS03285at 802.904 kb on + strand, within CA265_RS03285at 802.972 kb on - strand, within CA265_RS03285at 802.978 kb on - strand, within CA265_RS03285at 803.006 kb on - strand, within CA265_RS03285at 803.080 kb on + strand, within CA265_RS03285at 803.097 kb on - strand, within CA265_RS03285at 803.126 kb on + strand, within CA265_RS03285at 803.127 kb on - strand, within CA265_RS03285at 803.127 kb on - strand, within CA265_RS03285at 803.143 kb on - strand, within CA265_RS03285at 803.143 kb on - strand, within CA265_RS03285at 803.187 kb on + strand, within CA265_RS03285at 803.237 kb on + strand, within CA265_RS03285at 803.238 kb on - strand, within CA265_RS03285at 803.238 kb on - strand, within CA265_RS03285at 803.274 kb on - strand, within CA265_RS03285at 803.294 kb on - strandat 803.319 kb on - strandat 803.333 kb on + strandat 803.334 kb on - strandat 803.379 kb on + strandat 803.380 kb on - strandat 803.388 kb on - strandat 803.388 kb on - strandat 803.390 kb on - strandat 803.392 kb on + strandat 803.395 kb on - strandat 803.395 kb on - strandat 803.454 kb on + strandat 803.455 kb on - strandat 803.458 kb on + strandat 803.458 kb on + strandat 803.459 kb on - strandat 803.491 kb on - strandat 803.491 kb on - strandat 803.495 kb on - strandat 803.496 kb on + strandat 803.499 kb on + strandat 803.577 kb on + strandat 803.578 kb on - strandat 803.599 kb on + strandat 803.600 kb on - strandat 803.611 kb on + strandat 803.663 kb on - strandat 803.665 kb on - strandat 803.730 kb on - strand, within CA265_RS03290at 803.730 kb on - strand, within CA265_RS03290at 803.738 kb on - strand, within CA265_RS03290at 803.738 kb on - strand, within CA265_RS03290at 803.848 kb on + strand, within CA265_RS03290at 803.849 kb on - strand, within CA265_RS03290at 803.858 kb on + strand, within CA265_RS03290at 803.927 kb on + strand, within CA265_RS03290at 803.928 kb on - strand, within CA265_RS03290at 803.937 kb on - strand, within CA265_RS03290at 803.953 kb on + strand, within CA265_RS03290at 803.959 kb on + strand, within CA265_RS03290at 804.155 kb on - strand, within CA265_RS03290at 804.224 kb on - strand, within CA265_RS03290at 804.224 kb on - strand, within CA265_RS03290at 804.249 kb on - strand, within CA265_RS03290at 804.265 kb on - strandat 804.268 kb on + strandat 804.317 kb on + strandat 804.371 kb on + strandat 804.449 kb on + strandat 804.449 kb on + strandat 804.507 kb on - strand, within CA265_RS03295at 804.609 kb on - strand, within CA265_RS03295at 804.692 kb on - strand, within CA265_RS03295at 804.837 kb on - strand, within CA265_RS03295at 804.837 kb on - strand, within CA265_RS03295at 804.839 kb on - strand, within CA265_RS03295at 804.867 kb on - strand, within CA265_RS03295at 804.892 kb on + strand, within CA265_RS03295at 804.906 kb on - strand, within CA265_RS03295at 804.915 kb on - strand, within CA265_RS03295at 804.991 kb on - strand, within CA265_RS03295at 805.017 kb on - strand, within CA265_RS03295at 805.020 kb on - strand, within CA265_RS03295at 805.020 kb on - strand, within CA265_RS03295at 805.083 kb on - strand, within CA265_RS03295at 805.157 kb on - strand, within CA265_RS03295at 805.157 kb on - strand, within CA265_RS03295at 805.157 kb on - strand, within CA265_RS03295at 805.212 kb on - strand, within CA265_RS03295at 805.229 kb on + strand, within CA265_RS03295at 805.230 kb on - strand, within CA265_RS03295at 805.243 kb on - strand, within CA265_RS03295at 805.257 kb on - strand, within CA265_RS03295at 805.260 kb on + strand, within CA265_RS03295at 805.315 kb on + strand, within CA265_RS03295at 805.316 kb on - strand, within CA265_RS03295

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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802,672 - +0.1
802,688 + +0.6
802,692 - -0.9
802,763 + CA265_RS03285 0.18 +1.4
802,820 - CA265_RS03285 0.26 -0.7
802,822 - CA265_RS03285 0.26 -0.5
802,836 + CA265_RS03285 0.28 +1.1
802,866 + CA265_RS03285 0.32 +0.4
802,883 + CA265_RS03285 0.35 +0.0
802,904 + CA265_RS03285 0.37 -1.6
802,904 + CA265_RS03285 0.37 -0.3
802,972 - CA265_RS03285 0.47 -0.5
802,978 - CA265_RS03285 0.48 -0.5
803,006 - CA265_RS03285 0.51 -0.6
803,080 + CA265_RS03285 0.61 +0.5
803,097 - CA265_RS03285 0.64 +0.2
803,126 + CA265_RS03285 0.68 +0.8
803,127 - CA265_RS03285 0.68 +0.2
803,127 - CA265_RS03285 0.68 +0.4
803,143 - CA265_RS03285 0.70 -0.2
803,143 - CA265_RS03285 0.70 -0.1
803,187 + CA265_RS03285 0.76 +0.7
803,237 + CA265_RS03285 0.83 -0.6
803,238 - CA265_RS03285 0.83 -1.0
803,238 - CA265_RS03285 0.83 +0.7
803,274 - CA265_RS03285 0.88 -0.8
803,294 - -0.7
803,319 - -0.7
803,333 + +0.3
803,334 - -0.4
803,379 + +0.9
803,380 - -0.2
803,388 - -0.5
803,388 - -0.4
803,390 - -2.0
803,392 + +0.7
803,395 - -1.0
803,395 - -0.9
803,454 + -0.4
803,455 - +0.1
803,458 + +1.1
803,458 + -0.4
803,459 - -0.3
803,491 - -0.0
803,491 - +1.8
803,495 - -0.7
803,496 + -0.2
803,499 + -0.1
803,577 + +1.0
803,578 - +6.0
803,599 + +1.2
803,600 - +5.6
803,611 + +5.6
803,663 - +5.7
803,665 - +6.0
803,730 - CA265_RS03290 0.17 +5.7
803,730 - CA265_RS03290 0.17 +6.0
803,738 - CA265_RS03290 0.18 +5.8
803,738 - CA265_RS03290 0.18 +5.2
803,848 + CA265_RS03290 0.33 +5.3
803,849 - CA265_RS03290 0.33 +5.5
803,858 + CA265_RS03290 0.34 +5.6
803,927 + CA265_RS03290 0.44 +5.8
803,928 - CA265_RS03290 0.44 +4.9
803,937 - CA265_RS03290 0.45 +5.9
803,953 + CA265_RS03290 0.48 +5.6
803,959 + CA265_RS03290 0.48 +5.7
804,155 - CA265_RS03290 0.75 +5.8
804,224 - CA265_RS03290 0.85 +5.5
804,224 - CA265_RS03290 0.85 +5.5
804,249 - CA265_RS03290 0.88 +5.6
804,265 - +5.9
804,268 + +6.0
804,317 + -0.8
804,371 + +6.3
804,449 + +5.7
804,449 + +6.0
804,507 - CA265_RS03295 0.10 +5.8
804,609 - CA265_RS03295 0.16 +4.8
804,692 - CA265_RS03295 0.21 +5.6
804,837 - CA265_RS03295 0.30 +5.9
804,837 - CA265_RS03295 0.30 +5.5
804,839 - CA265_RS03295 0.30 +5.7
804,867 - CA265_RS03295 0.32 +5.3
804,892 + CA265_RS03295 0.33 +5.4
804,906 - CA265_RS03295 0.34 +5.9
804,915 - CA265_RS03295 0.35 +6.2
804,991 - CA265_RS03295 0.39 +5.5
805,017 - CA265_RS03295 0.41 +5.3
805,020 - CA265_RS03295 0.41 +5.5
805,020 - CA265_RS03295 0.41 +5.6
805,083 - CA265_RS03295 0.44 +4.9
805,157 - CA265_RS03295 0.49 +5.5
805,157 - CA265_RS03295 0.49 +5.6
805,157 - CA265_RS03295 0.49 +4.9
805,212 - CA265_RS03295 0.52 +5.4
805,229 + CA265_RS03295 0.53 +6.4
805,230 - CA265_RS03295 0.53 +5.4
805,243 - CA265_RS03295 0.54 +5.4
805,257 - CA265_RS03295 0.55 +5.3
805,260 + CA265_RS03295 0.55 +5.9
805,315 + CA265_RS03295 0.58 +5.8
805,316 - CA265_RS03295 0.58 +4.8

Or see this region's nucleotide sequence