Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01435 and CA265_RS01440 are separated by 29 nucleotides CA265_RS01440 and CA265_RS01445 are separated by 402 nucleotides
CA265_RS01435: CA265_RS01435 - hypothetical protein, at 362,564 to 365,686
_RS01435
CA265_RS01440: CA265_RS01440 - hypothetical protein, at 365,716 to 366,900
_RS01440
CA265_RS01445: CA265_RS01445 - hypothetical protein, at 367,303 to 368,619
_RS01445
Position (kb) 365
366
367 Strain fitness (log2 ratio) -2
-1
0
1
2 at 364.725 kb on + strand, within CA265_RS01435 at 364.730 kb on + strand, within CA265_RS01435 at 364.775 kb on + strand, within CA265_RS01435 at 364.775 kb on + strand, within CA265_RS01435 at 364.775 kb on + strand, within CA265_RS01435 at 364.776 kb on - strand, within CA265_RS01435 at 364.811 kb on - strand, within CA265_RS01435 at 364.849 kb on - strand, within CA265_RS01435 at 364.866 kb on + strand, within CA265_RS01435 at 364.892 kb on + strand, within CA265_RS01435 at 364.900 kb on + strand, within CA265_RS01435 at 364.900 kb on + strand, within CA265_RS01435 at 364.912 kb on + strand, within CA265_RS01435 at 364.913 kb on - strand, within CA265_RS01435 at 364.913 kb on - strand, within CA265_RS01435 at 364.913 kb on - strand, within CA265_RS01435 at 364.961 kb on + strand, within CA265_RS01435 at 365.017 kb on + strand, within CA265_RS01435 at 365.102 kb on - strand, within CA265_RS01435 at 365.103 kb on + strand, within CA265_RS01435 at 365.103 kb on + strand, within CA265_RS01435 at 365.175 kb on - strand, within CA265_RS01435 at 365.204 kb on - strand, within CA265_RS01435 at 365.256 kb on - strand, within CA265_RS01435 at 365.257 kb on + strand, within CA265_RS01435 at 365.257 kb on + strand, within CA265_RS01435 at 365.257 kb on + strand, within CA265_RS01435 at 365.258 kb on - strand, within CA265_RS01435 at 365.323 kb on + strand at 365.323 kb on + strand, within CA265_RS01435 at 365.386 kb on + strand at 365.412 kb on - strand at 365.483 kb on + strand at 365.527 kb on + strand at 365.528 kb on - strand at 365.606 kb on - strand at 365.606 kb on - strand at 365.661 kb on - strand at 365.661 kb on - strand at 365.672 kb on - strand at 365.732 kb on - strand at 365.781 kb on - strand at 365.860 kb on + strand, within CA265_RS01440 at 365.892 kb on + strand, within CA265_RS01440 at 365.958 kb on + strand, within CA265_RS01440 at 365.978 kb on + strand, within CA265_RS01440 at 365.991 kb on + strand, within CA265_RS01440 at 366.079 kb on + strand, within CA265_RS01440 at 366.239 kb on + strand, within CA265_RS01440 at 366.284 kb on + strand, within CA265_RS01440 at 366.284 kb on + strand, within CA265_RS01440 at 366.332 kb on + strand, within CA265_RS01440 at 366.332 kb on + strand, within CA265_RS01440 at 366.355 kb on - strand, within CA265_RS01440 at 366.355 kb on - strand, within CA265_RS01440 at 366.405 kb on - strand, within CA265_RS01440 at 366.442 kb on - strand, within CA265_RS01440 at 366.463 kb on - strand, within CA265_RS01440 at 366.566 kb on + strand, within CA265_RS01440 at 366.592 kb on + strand, within CA265_RS01440 at 366.592 kb on + strand, within CA265_RS01440 at 366.593 kb on - strand, within CA265_RS01440 at 366.599 kb on + strand, within CA265_RS01440 at 366.609 kb on - strand, within CA265_RS01440 at 366.642 kb on + strand, within CA265_RS01440 at 366.645 kb on + strand, within CA265_RS01440 at 366.646 kb on - strand, within CA265_RS01440 at 366.646 kb on - strand, within CA265_RS01440 at 366.690 kb on + strand, within CA265_RS01440 at 366.859 kb on - strand at 366.944 kb on + strand at 367.093 kb on + strand at 367.125 kb on - strand at 367.138 kb on - strand at 367.138 kb on - strand at 367.138 kb on - strand at 367.141 kb on + strand at 367.379 kb on - strand at 367.442 kb on + strand, within CA265_RS01445 at 367.445 kb on - strand, within CA265_RS01445 at 367.477 kb on - strand, within CA265_RS01445 at 367.574 kb on - strand, within CA265_RS01445 at 367.588 kb on - strand, within CA265_RS01445 at 367.624 kb on + strand, within CA265_RS01445 at 367.625 kb on - strand, within CA265_RS01445 at 367.625 kb on - strand, within CA265_RS01445 at 367.629 kb on - strand, within CA265_RS01445 at 367.631 kb on - strand, within CA265_RS01445 at 367.632 kb on + strand, within CA265_RS01445 at 367.632 kb on + strand, within CA265_RS01445 at 367.633 kb on - strand, within CA265_RS01445 at 367.714 kb on - strand, within CA265_RS01445 at 367.736 kb on + strand, within CA265_RS01445 at 367.736 kb on + strand, within CA265_RS01445 at 367.737 kb on - strand, within CA265_RS01445 at 367.737 kb on - strand, within CA265_RS01445 at 367.745 kb on + strand, within CA265_RS01445 at 367.745 kb on + strand, within CA265_RS01445 at 367.745 kb on + strand, within CA265_RS01445 at 367.854 kb on + strand, within CA265_RS01445 at 367.865 kb on - strand, within CA265_RS01445
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 364,725 + CA265_RS01435 0.69 -0.0 364,730 + CA265_RS01435 0.69 -0.6 364,775 + CA265_RS01435 0.71 -0.1 364,775 + CA265_RS01435 0.71 +1.2 364,775 + CA265_RS01435 0.71 -1.2 364,776 - CA265_RS01435 0.71 +1.2 364,811 - CA265_RS01435 0.72 -0.8 364,849 - CA265_RS01435 0.73 +0.0 364,866 + CA265_RS01435 0.74 +0.8 364,892 + CA265_RS01435 0.75 +0.5 364,900 + CA265_RS01435 0.75 -0.1 364,900 + CA265_RS01435 0.75 +0.3 364,912 + CA265_RS01435 0.75 -0.6 364,913 - CA265_RS01435 0.75 +0.4 364,913 - CA265_RS01435 0.75 -0.8 364,913 - CA265_RS01435 0.75 +0.6 364,961 + CA265_RS01435 0.77 -0.3 365,017 + CA265_RS01435 0.79 -0.6 365,102 - CA265_RS01435 0.81 +0.4 365,103 + CA265_RS01435 0.81 +2.4 365,103 + CA265_RS01435 0.81 -0.7 365,175 - CA265_RS01435 0.84 -0.2 365,204 - CA265_RS01435 0.85 -0.8 365,256 - CA265_RS01435 0.86 -2.6 365,257 + CA265_RS01435 0.86 +0.8 365,257 + CA265_RS01435 0.86 +0.5 365,257 + CA265_RS01435 0.86 -0.8 365,258 - CA265_RS01435 0.86 +1.2 365,323 + +0.8 365,323 + CA265_RS01435 0.88 -0.6 365,386 + +0.5 365,412 - +0.9 365,483 + -0.7 365,527 + +0.7 365,528 - -1.2 365,606 - -0.5 365,606 - -0.3 365,661 - +0.2 365,661 - -0.0 365,672 - -2.0 365,732 - -1.3 365,781 - +0.5 365,860 + CA265_RS01440 0.12 -0.1 365,892 + CA265_RS01440 0.15 -0.3 365,958 + CA265_RS01440 0.20 -0.1 365,978 + CA265_RS01440 0.22 -0.7 365,991 + CA265_RS01440 0.23 -1.9 366,079 + CA265_RS01440 0.31 +0.5 366,239 + CA265_RS01440 0.44 -0.2 366,284 + CA265_RS01440 0.48 +0.4 366,284 + CA265_RS01440 0.48 -0.7 366,332 + CA265_RS01440 0.52 -0.6 366,332 + CA265_RS01440 0.52 +0.3 366,355 - CA265_RS01440 0.54 -0.9 366,355 - CA265_RS01440 0.54 -0.7 366,405 - CA265_RS01440 0.58 -0.9 366,442 - CA265_RS01440 0.61 -1.8 366,463 - CA265_RS01440 0.63 -1.1 366,566 + CA265_RS01440 0.72 -1.3 366,592 + CA265_RS01440 0.74 -0.3 366,592 + CA265_RS01440 0.74 +0.4 366,593 - CA265_RS01440 0.74 -1.2 366,599 + CA265_RS01440 0.75 -0.5 366,609 - CA265_RS01440 0.75 +0.7 366,642 + CA265_RS01440 0.78 +0.9 366,645 + CA265_RS01440 0.78 +0.9 366,646 - CA265_RS01440 0.78 +0.1 366,646 - CA265_RS01440 0.78 -0.6 366,690 + CA265_RS01440 0.82 +1.1 366,859 - -0.4 366,944 + -0.1 367,093 + +0.6 367,125 - -1.7 367,138 - -1.4 367,138 - -0.9 367,138 - -1.4 367,141 + -0.4 367,379 - +0.6 367,442 + CA265_RS01445 0.11 -1.2 367,445 - CA265_RS01445 0.11 -1.9 367,477 - CA265_RS01445 0.13 +0.2 367,574 - CA265_RS01445 0.21 -0.5 367,588 - CA265_RS01445 0.22 +1.1 367,624 + CA265_RS01445 0.24 +0.5 367,625 - CA265_RS01445 0.24 -0.2 367,625 - CA265_RS01445 0.24 -0.7 367,629 - CA265_RS01445 0.25 +1.0 367,631 - CA265_RS01445 0.25 -0.1 367,632 + CA265_RS01445 0.25 +0.7 367,632 + CA265_RS01445 0.25 +0.4 367,633 - CA265_RS01445 0.25 -0.2 367,714 - CA265_RS01445 0.31 -1.2 367,736 + CA265_RS01445 0.33 +0.8 367,736 + CA265_RS01445 0.33 +0.7 367,737 - CA265_RS01445 0.33 -0.2 367,737 - CA265_RS01445 0.33 -0.0 367,745 + CA265_RS01445 0.34 +0.3 367,745 + CA265_RS01445 0.34 -1.6 367,745 + CA265_RS01445 0.34 +0.3 367,854 + CA265_RS01445 0.42 +1.2 367,865 - CA265_RS01445 0.43 +0.5
Or see this region's nucleotide sequence