Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00935 and CA265_RS00940 are separated by 563 nucleotides CA265_RS00940 and CA265_RS00945 overlap by 38 nucleotides
CA265_RS00935: CA265_RS00935 - hypothetical protein, at 233,511 to 234,644
_RS00935
CA265_RS00940: CA265_RS00940 - hypothetical protein, at 235,208 to 235,444
_RS00940
CA265_RS00945: CA265_RS00945 - SusC/RagA family TonB-linked outer membrane protein, at 235,407 to 238,538
_RS00945
Position (kb) 235
236 Strain fitness (log2 ratio) -1
0
1
2
3 at 234.261 kb on - strand, within CA265_RS00935 at 234.339 kb on - strand, within CA265_RS00935 at 234.397 kb on + strand, within CA265_RS00935 at 234.398 kb on - strand, within CA265_RS00935 at 234.431 kb on - strand, within CA265_RS00935 at 234.470 kb on + strand, within CA265_RS00935 at 234.559 kb on + strand at 234.559 kb on + strand at 234.560 kb on - strand at 234.560 kb on - strand at 234.642 kb on + strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.660 kb on - strand at 234.815 kb on - strand at 234.888 kb on + strand at 235.045 kb on + strand at 235.124 kb on - strand at 235.134 kb on - strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.135 kb on + strand at 235.237 kb on + strand, within CA265_RS00940 at 235.238 kb on - strand, within CA265_RS00940 at 235.258 kb on + strand, within CA265_RS00940 at 235.302 kb on - strand, within CA265_RS00940 at 235.303 kb on + strand, within CA265_RS00940 at 235.304 kb on - strand, within CA265_RS00940 at 235.391 kb on + strand, within CA265_RS00940 at 235.452 kb on - strand at 235.567 kb on + strand at 235.676 kb on + strand at 235.723 kb on + strand, within CA265_RS00945 at 235.916 kb on + strand, within CA265_RS00945 at 235.947 kb on + strand, within CA265_RS00945 at 235.954 kb on + strand, within CA265_RS00945 at 236.071 kb on + strand, within CA265_RS00945 at 236.073 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.148 kb on + strand, within CA265_RS00945 at 236.149 kb on - strand, within CA265_RS00945 at 236.215 kb on - strand, within CA265_RS00945 at 236.295 kb on - strand, within CA265_RS00945 at 236.295 kb on - strand, within CA265_RS00945 at 236.326 kb on + strand, within CA265_RS00945 at 236.326 kb on + strand, within CA265_RS00945 at 236.361 kb on + strand, within CA265_RS00945 at 236.362 kb on - strand, within CA265_RS00945 at 236.362 kb on - strand, within CA265_RS00945 at 236.363 kb on + strand, within CA265_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 234,261 - CA265_RS00935 0.66 -0.1 234,339 - CA265_RS00935 0.73 +0.6 234,397 + CA265_RS00935 0.78 -1.0 234,398 - CA265_RS00935 0.78 -0.4 234,431 - CA265_RS00935 0.81 +0.0 234,470 + CA265_RS00935 0.85 -0.2 234,559 + +1.3 234,559 + -0.9 234,560 - -0.9 234,560 - +0.3 234,642 + +0.4 234,660 - -0.8 234,660 - -0.2 234,660 - -0.1 234,815 - -0.7 234,888 + +2.3 235,045 + +2.3 235,124 - -0.4 235,134 - +0.3 235,135 + +2.0 235,135 + +2.6 235,135 + +2.4 235,237 + CA265_RS00940 0.12 +3.0 235,238 - CA265_RS00940 0.13 -0.1 235,258 + CA265_RS00940 0.21 +1.3 235,302 - CA265_RS00940 0.40 -1.7 235,303 + CA265_RS00940 0.40 +2.7 235,304 - CA265_RS00940 0.41 +1.2 235,391 + CA265_RS00940 0.77 -0.5 235,452 - +0.1 235,567 + +0.1 235,676 + +0.8 235,723 + CA265_RS00945 0.10 -0.2 235,916 + CA265_RS00945 0.16 -0.5 235,947 + CA265_RS00945 0.17 +0.3 235,954 + CA265_RS00945 0.17 +0.2 236,071 + CA265_RS00945 0.21 -0.8 236,073 + CA265_RS00945 0.21 -1.1 236,148 + CA265_RS00945 0.24 +1.0 236,148 + CA265_RS00945 0.24 -0.2 236,148 + CA265_RS00945 0.24 +1.3 236,149 - CA265_RS00945 0.24 -1.1 236,215 - CA265_RS00945 0.26 +0.1 236,295 - CA265_RS00945 0.28 -0.2 236,295 - CA265_RS00945 0.28 +1.6 236,326 + CA265_RS00945 0.29 +0.6 236,326 + CA265_RS00945 0.29 -0.1 236,361 + CA265_RS00945 0.30 -0.2 236,362 - CA265_RS00945 0.30 +1.1 236,362 - CA265_RS00945 0.30 +0.1 236,363 + CA265_RS00945 0.31 +0.3
Or see this region's nucleotide sequence