Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0240 and BT0241 are separated by 165 nucleotides BT0241 and BT0242 are separated by 29 nucleotides BT0242 and BT0243 are separated by 78 nucleotides BT0243 and BT0244 are separated by 50 nucleotides
BT0240: BT0240 - conserved hypothetical protein (NCBI ptt file), at 264,306 to 266,060
BT0240
BT0241: BT0241 - hypothetical protein (NCBI ptt file), at 266,226 to 266,609
BT0241
BT0242: BT0242 - putative polysaccharide deacetylase (NCBI ptt file), at 266,639 to 267,115
BT0242
BT0243: BT0243 - putative 1-acyl-sn-glycerol-3-phosphate acyltransferase (NCBI ptt file), at 267,194 to 268,021
BT0243
BT0244: BT0244 - putative exonuclease (NCBI ptt file), at 268,072 to 269,322
BT0244
Position (kb) 266
267
268 Strain fitness (log2 ratio) -1
0
1
2
3 at 265.657 kb on + strand, within BT0240 at 265.742 kb on - strand, within BT0240 at 265.819 kb on + strand, within BT0240 at 265.946 kb on - strand at 266.382 kb on - strand, within BT0241 at 266.459 kb on - strand, within BT0241 at 266.524 kb on + strand, within BT0241 at 266.634 kb on - strand at 266.638 kb on - strand at 266.662 kb on + strand at 266.663 kb on - strand at 266.695 kb on + strand, within BT0242 at 266.696 kb on - strand, within BT0242 at 266.704 kb on + strand, within BT0242 at 266.763 kb on + strand, within BT0242 at 266.818 kb on - strand, within BT0242 at 266.935 kb on + strand, within BT0242 at 267.036 kb on + strand, within BT0242 at 267.109 kb on + strand at 267.109 kb on + strand at 267.109 kb on + strand at 267.157 kb on + strand at 267.967 kb on + strand at 268.014 kb on + strand at 268.015 kb on - strand at 268.022 kb on - strand at 268.022 kb on - strand at 268.072 kb on - strand at 268.083 kb on - strand at 268.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 265,657 + BT0240 0.77 +3.1 265,742 - BT0240 0.82 +2.9 265,819 + BT0240 0.86 +3.5 265,946 - +1.2 266,382 - BT0241 0.41 +3.5 266,459 - BT0241 0.61 +1.1 266,524 + BT0241 0.78 +2.4 266,634 - +2.6 266,638 - +0.9 266,662 + +1.9 266,663 - +0.4 266,695 + BT0242 0.12 +2.9 266,696 - BT0242 0.12 +1.4 266,704 + BT0242 0.14 +1.6 266,763 + BT0242 0.26 +3.5 266,818 - BT0242 0.38 +3.7 266,935 + BT0242 0.62 +3.3 267,036 + BT0242 0.83 +3.2 267,109 + +3.0 267,109 + +1.9 267,109 + +2.3 267,157 + +1.8 267,967 + +3.2 268,014 + -1.3 268,015 - +1.5 268,022 - +0.9 268,022 - -0.4 268,072 - +0.0 268,083 - +0.0 268,085 + +1.2
Or see this region's nucleotide sequence