Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20355

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS20345 and ABZR86_RS20350 overlap by 4 nucleotidesABZR86_RS20350 and ABZR86_RS20355 are separated by 13 nucleotidesABZR86_RS20355 and ABZR86_RS20360 are separated by 121 nucleotides ABZR86_RS20345: ABZR86_RS20345 - paraquat-inducible protein A, at 7,390 to 8,025 _RS20345 ABZR86_RS20350: ABZR86_RS20350 - paraquat-inducible protein A, at 8,022 to 8,621 _RS20350 ABZR86_RS20355: ABZR86_RS20355 - DUF3313 domain-containing protein, at 8,635 to 9,300 _RS20355 ABZR86_RS20360: ABZR86_RS20360 - ATP-binding protein, at 9,422 to 10,579 _RS20360 Position (kb) 8 9 10Strain fitness (log2 ratio) -1 0 1 2at 7.677 kb on - strand, within ABZR86_RS20345at 7.838 kb on + strand, within ABZR86_RS20345at 7.839 kb on - strand, within ABZR86_RS20345at 7.839 kb on - strand, within ABZR86_RS20345at 7.839 kb on - strand, within ABZR86_RS20345at 7.839 kb on - strand, within ABZR86_RS20345at 7.839 kb on - strand, within ABZR86_RS20345at 7.839 kb on - strand, within ABZR86_RS20345at 8.268 kb on + strand, within ABZR86_RS20350at 8.268 kb on + strand, within ABZR86_RS20350at 8.269 kb on - strand, within ABZR86_RS20350at 8.468 kb on + strand, within ABZR86_RS20350at 8.468 kb on + strand, within ABZR86_RS20350at 8.736 kb on - strand, within ABZR86_RS20355at 8.750 kb on + strand, within ABZR86_RS20355at 8.751 kb on - strand, within ABZR86_RS20355at 8.784 kb on - strand, within ABZR86_RS20355at 8.784 kb on - strand, within ABZR86_RS20355at 8.855 kb on + strand, within ABZR86_RS20355at 8.856 kb on - strand, within ABZR86_RS20355at 9.078 kb on - strand, within ABZR86_RS20355at 9.078 kb on - strand, within ABZR86_RS20355at 9.138 kb on - strand, within ABZR86_RS20355at 9.185 kb on + strand, within ABZR86_RS20355at 9.186 kb on - strand, within ABZR86_RS20355at 9.210 kb on - strand, within ABZR86_RS20355at 9.294 kb on + strandat 9.349 kb on + strandat 9.375 kb on - strandat 9.574 kb on - strand, within ABZR86_RS20360at 9.743 kb on + strand, within ABZR86_RS20360at 9.744 kb on - strand, within ABZR86_RS20360

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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7,677 - ABZR86_RS20345 0.45 +0.2
7,838 + ABZR86_RS20345 0.70 +0.6
7,839 - ABZR86_RS20345 0.71 +0.3
7,839 - ABZR86_RS20345 0.71 +0.8
7,839 - ABZR86_RS20345 0.71 +0.2
7,839 - ABZR86_RS20345 0.71 +0.3
7,839 - ABZR86_RS20345 0.71 +1.0
7,839 - ABZR86_RS20345 0.71 +0.5
8,268 + ABZR86_RS20350 0.41 -0.1
8,268 + ABZR86_RS20350 0.41 +1.8
8,269 - ABZR86_RS20350 0.41 +0.7
8,468 + ABZR86_RS20350 0.74 +0.3
8,468 + ABZR86_RS20350 0.74 -0.0
8,736 - ABZR86_RS20355 0.15 +2.1
8,750 + ABZR86_RS20355 0.17 -0.0
8,751 - ABZR86_RS20355 0.17 +0.0
8,784 - ABZR86_RS20355 0.22 +0.3
8,784 - ABZR86_RS20355 0.22 +0.3
8,855 + ABZR86_RS20355 0.33 -1.3
8,856 - ABZR86_RS20355 0.33 +0.5
9,078 - ABZR86_RS20355 0.67 -0.3
9,078 - ABZR86_RS20355 0.67 +0.1
9,138 - ABZR86_RS20355 0.76 -0.5
9,185 + ABZR86_RS20355 0.83 -0.2
9,186 - ABZR86_RS20355 0.83 +0.0
9,210 - ABZR86_RS20355 0.86 +0.0
9,294 + +0.9
9,349 + +0.7
9,375 - +0.4
9,574 - ABZR86_RS20360 0.13 -0.5
9,743 + ABZR86_RS20360 0.28 +0.6
9,744 - ABZR86_RS20360 0.28 +0.8

Or see this region's nucleotide sequence