Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19785

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19780 and ABZR86_RS19785 are separated by 150 nucleotidesABZR86_RS19785 and ABZR86_RS19790 are separated by 102 nucleotidesABZR86_RS19790 and ABZR86_RS19795 overlap by 8 nucleotidesABZR86_RS19795 and ABZR86_RS19800 are separated by 37 nucleotides ABZR86_RS19780: ABZR86_RS19780 - LysR family transcriptional regulator, at 453,853 to 454,734 _RS19780 ABZR86_RS19785: ABZR86_RS19785 - phosphoenolpyruvate--protein phosphotransferase, at 454,885 to 456,615 _RS19785 ABZR86_RS19790: ABZR86_RS19790 - HPr family phosphocarrier protein, at 456,718 to 456,987 _RS19790 ABZR86_RS19795: ABZR86_RS19795 - PTS sugar transporter subunit IIA, at 456,980 to 457,372 _RS19795 ABZR86_RS19800: ABZR86_RS19800 - RNase adapter RapZ, at 457,410 to 458,312 _RS19800 Position (kb) 454 455 456 457Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 454.084 kb on + strand, within ABZR86_RS19780at 454.139 kb on + strand, within ABZR86_RS19780at 454.139 kb on + strand, within ABZR86_RS19780at 454.139 kb on + strand, within ABZR86_RS19780at 454.139 kb on + strand, within ABZR86_RS19780at 454.139 kb on + strand, within ABZR86_RS19780at 454.139 kb on + strand, within ABZR86_RS19780at 454.140 kb on - strand, within ABZR86_RS19780at 454.140 kb on - strand, within ABZR86_RS19780at 454.140 kb on - strand, within ABZR86_RS19780at 454.140 kb on - strand, within ABZR86_RS19780at 454.158 kb on + strand, within ABZR86_RS19780at 454.158 kb on + strand, within ABZR86_RS19780at 454.159 kb on - strand, within ABZR86_RS19780at 454.159 kb on - strand, within ABZR86_RS19780at 454.159 kb on - strand, within ABZR86_RS19780at 454.159 kb on - strand, within ABZR86_RS19780at 454.159 kb on - strand, within ABZR86_RS19780at 454.171 kb on + strand, within ABZR86_RS19780at 454.171 kb on + strand, within ABZR86_RS19780at 454.171 kb on + strand, within ABZR86_RS19780at 454.171 kb on + strand, within ABZR86_RS19780at 454.172 kb on - strand, within ABZR86_RS19780at 454.172 kb on - strand, within ABZR86_RS19780at 454.172 kb on - strand, within ABZR86_RS19780at 454.245 kb on + strand, within ABZR86_RS19780at 454.246 kb on - strand, within ABZR86_RS19780at 454.687 kb on + strandat 454.687 kb on + strandat 454.687 kb on + strandat 454.687 kb on + strandat 454.688 kb on - strandat 454.688 kb on - strandat 454.740 kb on - strandat 454.740 kb on - strandat 454.893 kb on + strandat 454.893 kb on + strandat 454.893 kb on + strandat 454.894 kb on - strandat 454.894 kb on - strandat 454.894 kb on - strandat 454.894 kb on - strandat 455.025 kb on + strandat 455.026 kb on - strandat 455.026 kb on - strandat 455.026 kb on - strandat 455.026 kb on - strandat 455.026 kb on - strandat 455.138 kb on + strand, within ABZR86_RS19785at 455.139 kb on - strand, within ABZR86_RS19785at 455.139 kb on - strand, within ABZR86_RS19785at 455.139 kb on - strand, within ABZR86_RS19785at 455.139 kb on - strand, within ABZR86_RS19785at 455.139 kb on - strand, within ABZR86_RS19785at 455.139 kb on - strand, within ABZR86_RS19785at 455.177 kb on + strand, within ABZR86_RS19785at 455.177 kb on + strand, within ABZR86_RS19785at 455.177 kb on + strand, within ABZR86_RS19785at 455.177 kb on + strand, within ABZR86_RS19785at 455.177 kb on + strand, within ABZR86_RS19785at 455.177 kb on + strand, within ABZR86_RS19785at 455.178 kb on - strand, within ABZR86_RS19785at 455.178 kb on - strand, within ABZR86_RS19785at 455.178 kb on - strand, within ABZR86_RS19785at 455.178 kb on - strand, within ABZR86_RS19785at 455.178 kb on - strand, within ABZR86_RS19785at 455.178 kb on - strand, within ABZR86_RS19785at 455.178 kb on - strand, within ABZR86_RS19785at 455.222 kb on + strand, within ABZR86_RS19785at 455.222 kb on + strand, within ABZR86_RS19785at 455.222 kb on + strand, within ABZR86_RS19785at 455.222 kb on + strand, within ABZR86_RS19785at 455.222 kb on + strand, within ABZR86_RS19785at 455.222 kb on + strand, within ABZR86_RS19785at 455.222 kb on + strand, within ABZR86_RS19785at 455.223 kb on - strand, within ABZR86_RS19785at 455.223 kb on - strand, within ABZR86_RS19785at 455.223 kb on - strand, within ABZR86_RS19785at 455.223 kb on - strand, within ABZR86_RS19785at 455.223 kb on - strand, within ABZR86_RS19785at 455.451 kb on - strand, within ABZR86_RS19785at 455.451 kb on - strand, within ABZR86_RS19785at 455.717 kb on + strand, within ABZR86_RS19785at 455.717 kb on + strand, within ABZR86_RS19785at 456.041 kb on + strand, within ABZR86_RS19785at 456.242 kb on + strand, within ABZR86_RS19785at 456.242 kb on + strand, within ABZR86_RS19785at 456.243 kb on - strand, within ABZR86_RS19785at 456.243 kb on - strand, within ABZR86_RS19785at 456.315 kb on - strand, within ABZR86_RS19785at 456.315 kb on - strand, within ABZR86_RS19785at 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.695 kb on + strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.696 kb on - strandat 456.720 kb on - strandat 456.889 kb on + strand, within ABZR86_RS19790at 456.889 kb on + strand, within ABZR86_RS19790at 456.889 kb on + strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.890 kb on - strand, within ABZR86_RS19790at 456.964 kb on + strandat 456.964 kb on + strandat 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.059 kb on + strand, within ABZR86_RS19795at 457.060 kb on - strand, within ABZR86_RS19795at 457.060 kb on - strand, within ABZR86_RS19795at 457.068 kb on - strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.301 kb on + strand, within ABZR86_RS19795at 457.302 kb on - strand, within ABZR86_RS19795at 457.400 kb on + strandat 457.400 kb on + strandat 457.400 kb on + strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.401 kb on - strandat 457.486 kb on + strandat 457.486 kb on + strandat 457.486 kb on + strandat 457.487 kb on - strandat 457.487 kb on - strandat 457.487 kb on - strandat 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.534 kb on + strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.535 kb on - strand, within ABZR86_RS19800at 457.589 kb on + strand, within ABZR86_RS19800at 457.590 kb on - strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.600 kb on + strand, within ABZR86_RS19800at 457.601 kb on - strand, within ABZR86_RS19800

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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454,084 + ABZR86_RS19780 0.26 +1.0
454,139 + ABZR86_RS19780 0.32 +0.3
454,139 + ABZR86_RS19780 0.32 -0.0
454,139 + ABZR86_RS19780 0.32 +1.6
454,139 + ABZR86_RS19780 0.32 +0.1
454,139 + ABZR86_RS19780 0.32 +0.6
454,139 + ABZR86_RS19780 0.32 +0.6
454,140 - ABZR86_RS19780 0.33 +0.1
454,140 - ABZR86_RS19780 0.33 +1.4
454,140 - ABZR86_RS19780 0.33 -0.4
454,140 - ABZR86_RS19780 0.33 +0.3
454,158 + ABZR86_RS19780 0.35 -0.4
454,158 + ABZR86_RS19780 0.35 +1.5
454,159 - ABZR86_RS19780 0.35 +0.4
454,159 - ABZR86_RS19780 0.35 -0.9
454,159 - ABZR86_RS19780 0.35 -0.2
454,159 - ABZR86_RS19780 0.35 -0.6
454,159 - ABZR86_RS19780 0.35 -0.5
454,171 + ABZR86_RS19780 0.36 -0.1
454,171 + ABZR86_RS19780 0.36 -0.3
454,171 + ABZR86_RS19780 0.36 +0.6
454,171 + ABZR86_RS19780 0.36 +0.5
454,172 - ABZR86_RS19780 0.36 +0.6
454,172 - ABZR86_RS19780 0.36 +0.4
454,172 - ABZR86_RS19780 0.36 -0.1
454,245 + ABZR86_RS19780 0.44 +0.9
454,246 - ABZR86_RS19780 0.45 -0.2
454,687 + -0.3
454,687 + +1.5
454,687 + -0.4
454,687 + +1.0
454,688 - -0.2
454,688 - -1.0
454,740 - +0.0
454,740 - -0.2
454,893 + -0.2
454,893 + +1.4
454,893 + -1.7
454,894 - +0.2
454,894 - -0.5
454,894 - -0.4
454,894 - -1.7
455,025 + +0.4
455,026 - -0.2
455,026 - +1.0
455,026 - +0.7
455,026 - +1.0
455,026 - +0.6
455,138 + ABZR86_RS19785 0.15 +1.4
455,139 - ABZR86_RS19785 0.15 +0.3
455,139 - ABZR86_RS19785 0.15 +1.0
455,139 - ABZR86_RS19785 0.15 +1.1
455,139 - ABZR86_RS19785 0.15 -0.2
455,139 - ABZR86_RS19785 0.15 +0.2
455,139 - ABZR86_RS19785 0.15 +0.6
455,177 + ABZR86_RS19785 0.17 +1.4
455,177 + ABZR86_RS19785 0.17 -0.7
455,177 + ABZR86_RS19785 0.17 +0.2
455,177 + ABZR86_RS19785 0.17 +1.0
455,177 + ABZR86_RS19785 0.17 +0.1
455,177 + ABZR86_RS19785 0.17 +0.7
455,178 - ABZR86_RS19785 0.17 +0.4
455,178 - ABZR86_RS19785 0.17 +0.1
455,178 - ABZR86_RS19785 0.17 +0.1
455,178 - ABZR86_RS19785 0.17 +0.8
455,178 - ABZR86_RS19785 0.17 +1.0
455,178 - ABZR86_RS19785 0.17 +0.7
455,178 - ABZR86_RS19785 0.17 +0.4
455,222 + ABZR86_RS19785 0.19 -0.1
455,222 + ABZR86_RS19785 0.19 +1.5
455,222 + ABZR86_RS19785 0.19 +0.4
455,222 + ABZR86_RS19785 0.19 +1.8
455,222 + ABZR86_RS19785 0.19 +0.6
455,222 + ABZR86_RS19785 0.19 +0.8
455,222 + ABZR86_RS19785 0.19 +0.1
455,223 - ABZR86_RS19785 0.20 -1.0
455,223 - ABZR86_RS19785 0.20 +1.5
455,223 - ABZR86_RS19785 0.20 +0.3
455,223 - ABZR86_RS19785 0.20 +2.2
455,223 - ABZR86_RS19785 0.20 +0.6
455,451 - ABZR86_RS19785 0.33 +1.0
455,451 - ABZR86_RS19785 0.33 +0.2
455,717 + ABZR86_RS19785 0.48 +0.3
455,717 + ABZR86_RS19785 0.48 +0.8
456,041 + ABZR86_RS19785 0.67 +1.2
456,242 + ABZR86_RS19785 0.78 +0.2
456,242 + ABZR86_RS19785 0.78 +0.1
456,243 - ABZR86_RS19785 0.78 +1.5
456,243 - ABZR86_RS19785 0.78 +0.7
456,315 - ABZR86_RS19785 0.83 +1.2
456,315 - ABZR86_RS19785 0.83 +0.7
456,695 + -0.2
456,695 + +0.2
456,695 + -0.4
456,695 + +1.4
456,695 + +0.2
456,695 + -0.9
456,695 + +0.7
456,696 - -0.6
456,696 - -0.1
456,696 - +0.3
456,696 - +0.5
456,696 - -0.6
456,696 - +0.3
456,720 - -0.7
456,889 + ABZR86_RS19790 0.63 +0.3
456,889 + ABZR86_RS19790 0.63 +0.8
456,889 + ABZR86_RS19790 0.63 +0.0
456,890 - ABZR86_RS19790 0.64 +0.6
456,890 - ABZR86_RS19790 0.64 +1.0
456,890 - ABZR86_RS19790 0.64 +1.4
456,890 - ABZR86_RS19790 0.64 +0.6
456,890 - ABZR86_RS19790 0.64 -0.4
456,890 - ABZR86_RS19790 0.64 +0.6
456,964 + +1.2
456,964 + +0.7
457,059 + ABZR86_RS19795 0.20 -1.8
457,059 + ABZR86_RS19795 0.20 +1.0
457,059 + ABZR86_RS19795 0.20 -1.2
457,059 + ABZR86_RS19795 0.20 -4.0
457,059 + ABZR86_RS19795 0.20 -2.1
457,059 + ABZR86_RS19795 0.20 -3.5
457,059 + ABZR86_RS19795 0.20 -0.8
457,059 + ABZR86_RS19795 0.20 -1.9
457,059 + ABZR86_RS19795 0.20 -1.6
457,059 + ABZR86_RS19795 0.20 -1.9
457,060 - ABZR86_RS19795 0.20 +0.0
457,060 - ABZR86_RS19795 0.20 +0.0
457,068 - ABZR86_RS19795 0.22 +1.0
457,301 + ABZR86_RS19795 0.82 -0.4
457,301 + ABZR86_RS19795 0.82 -1.5
457,301 + ABZR86_RS19795 0.82 -1.3
457,301 + ABZR86_RS19795 0.82 -0.1
457,301 + ABZR86_RS19795 0.82 -1.0
457,302 - ABZR86_RS19795 0.82 -2.4
457,400 + -0.5
457,400 + -0.1
457,400 + -1.8
457,401 - -0.9
457,401 - -0.1
457,401 - -0.3
457,401 - -0.4
457,401 - -0.1
457,401 - -0.2
457,486 + +0.0
457,486 + +0.3
457,486 + -0.7
457,487 - -0.6
457,487 - -0.8
457,487 - -1.3
457,534 + ABZR86_RS19800 0.14 -1.5
457,534 + ABZR86_RS19800 0.14 +0.2
457,534 + ABZR86_RS19800 0.14 -0.8
457,534 + ABZR86_RS19800 0.14 +1.9
457,534 + ABZR86_RS19800 0.14 -1.3
457,535 - ABZR86_RS19800 0.14 +0.7
457,535 - ABZR86_RS19800 0.14 -0.2
457,535 - ABZR86_RS19800 0.14 -0.0
457,535 - ABZR86_RS19800 0.14 +0.1
457,535 - ABZR86_RS19800 0.14 +0.4
457,535 - ABZR86_RS19800 0.14 -0.9
457,535 - ABZR86_RS19800 0.14 +1.0
457,535 - ABZR86_RS19800 0.14 -0.1
457,535 - ABZR86_RS19800 0.14 +0.5
457,535 - ABZR86_RS19800 0.14 -1.3
457,535 - ABZR86_RS19800 0.14 +0.5
457,589 + ABZR86_RS19800 0.20 +0.2
457,590 - ABZR86_RS19800 0.20 -0.2
457,600 + ABZR86_RS19800 0.21 -2.2
457,600 + ABZR86_RS19800 0.21 -0.9
457,600 + ABZR86_RS19800 0.21 +0.2
457,601 - ABZR86_RS19800 0.21 -0.9

Or see this region's nucleotide sequence