Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19265

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS19260 and ABZR86_RS19265 are separated by 133 nucleotidesABZR86_RS19265 and ABZR86_RS19270 are separated by 10 nucleotides ABZR86_RS19260: ABZR86_RS19260 - filamentous hemagglutinin N-terminal domain-containing protein, at 309,073 to 311,274 _RS19260 ABZR86_RS19265: ABZR86_RS19265 - YbdD/YjiX family protein, at 311,408 to 311,602 _RS19265 ABZR86_RS19270: ABZR86_RS19270 - carbon starvation CstA family protein, at 311,613 to 313,688 _RS19270 Position (kb) 311 312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 310.417 kb on + strand, within ABZR86_RS19260at 310.433 kb on - strand, within ABZR86_RS19260at 310.458 kb on + strand, within ABZR86_RS19260at 310.509 kb on + strand, within ABZR86_RS19260at 310.509 kb on + strand, within ABZR86_RS19260at 310.510 kb on - strand, within ABZR86_RS19260at 310.601 kb on - strand, within ABZR86_RS19260at 310.606 kb on + strand, within ABZR86_RS19260at 310.606 kb on + strand, within ABZR86_RS19260at 310.606 kb on + strand, within ABZR86_RS19260at 310.606 kb on + strand, within ABZR86_RS19260at 310.606 kb on + strand, within ABZR86_RS19260at 310.607 kb on - strand, within ABZR86_RS19260at 310.607 kb on - strand, within ABZR86_RS19260at 310.607 kb on - strand, within ABZR86_RS19260at 310.607 kb on - strand, within ABZR86_RS19260at 310.607 kb on - strand, within ABZR86_RS19260at 310.612 kb on + strand, within ABZR86_RS19260at 310.624 kb on + strand, within ABZR86_RS19260at 310.625 kb on - strand, within ABZR86_RS19260at 310.625 kb on - strand, within ABZR86_RS19260at 310.636 kb on + strand, within ABZR86_RS19260at 310.637 kb on - strand, within ABZR86_RS19260at 310.637 kb on - strand, within ABZR86_RS19260at 310.648 kb on + strand, within ABZR86_RS19260at 310.648 kb on + strand, within ABZR86_RS19260at 310.648 kb on + strand, within ABZR86_RS19260at 310.648 kb on + strand, within ABZR86_RS19260at 310.648 kb on + strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.649 kb on - strand, within ABZR86_RS19260at 310.735 kb on + strand, within ABZR86_RS19260at 311.083 kb on - strandat 311.182 kb on + strandat 311.182 kb on + strandat 311.183 kb on - strandat 311.183 kb on - strandat 311.183 kb on - strandat 311.183 kb on - strandat 311.217 kb on + strandat 311.240 kb on - strandat 311.272 kb on + strandat 311.273 kb on - strandat 311.273 kb on - strandat 311.273 kb on - strandat 311.273 kb on - strandat 311.273 kb on - strandat 311.273 kb on - strandat 311.436 kb on + strand, within ABZR86_RS19265at 311.436 kb on + strand, within ABZR86_RS19265at 311.437 kb on - strand, within ABZR86_RS19265at 311.437 kb on - strand, within ABZR86_RS19265at 311.472 kb on + strand, within ABZR86_RS19265at 311.472 kb on + strand, within ABZR86_RS19265at 311.473 kb on - strand, within ABZR86_RS19265at 311.520 kb on + strand, within ABZR86_RS19265at 311.520 kb on + strand, within ABZR86_RS19265at 311.520 kb on + strand, within ABZR86_RS19265at 311.520 kb on + strand, within ABZR86_RS19265at 311.520 kb on + strand, within ABZR86_RS19265at 311.520 kb on + strand, within ABZR86_RS19265at 311.530 kb on - strand, within ABZR86_RS19265at 311.530 kb on - strand, within ABZR86_RS19265at 311.530 kb on - strand, within ABZR86_RS19265at 311.530 kb on - strand, within ABZR86_RS19265at 311.644 kb on + strandat 311.644 kb on + strandat 311.644 kb on + strandat 311.645 kb on - strandat 311.645 kb on - strandat 311.645 kb on - strandat 311.764 kb on + strandat 311.764 kb on + strandat 311.764 kb on + strandat 311.765 kb on - strandat 311.765 kb on - strandat 311.765 kb on - strandat 311.890 kb on + strand, within ABZR86_RS19270at 311.890 kb on + strand, within ABZR86_RS19270at 311.890 kb on + strand, within ABZR86_RS19270at 311.890 kb on + strand, within ABZR86_RS19270at 311.890 kb on + strand, within ABZR86_RS19270at 311.890 kb on + strand, within ABZR86_RS19270at 311.891 kb on - strand, within ABZR86_RS19270at 311.953 kb on + strand, within ABZR86_RS19270at 312.050 kb on + strand, within ABZR86_RS19270at 312.050 kb on + strand, within ABZR86_RS19270at 312.050 kb on + strand, within ABZR86_RS19270at 312.051 kb on - strand, within ABZR86_RS19270at 312.051 kb on - strand, within ABZR86_RS19270at 312.051 kb on - strand, within ABZR86_RS19270at 312.051 kb on - strand, within ABZR86_RS19270at 312.085 kb on + strand, within ABZR86_RS19270at 312.086 kb on - strand, within ABZR86_RS19270at 312.265 kb on + strand, within ABZR86_RS19270at 312.265 kb on + strand, within ABZR86_RS19270at 312.503 kb on - strand, within ABZR86_RS19270

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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310,417 + ABZR86_RS19260 0.61 +0.8
310,433 - ABZR86_RS19260 0.62 +0.4
310,458 + ABZR86_RS19260 0.63 +0.3
310,509 + ABZR86_RS19260 0.65 +1.6
310,509 + ABZR86_RS19260 0.65 +2.7
310,510 - ABZR86_RS19260 0.65 +0.4
310,601 - ABZR86_RS19260 0.69 -0.1
310,606 + ABZR86_RS19260 0.70 +1.0
310,606 + ABZR86_RS19260 0.70 -0.3
310,606 + ABZR86_RS19260 0.70 +1.1
310,606 + ABZR86_RS19260 0.70 +0.1
310,606 + ABZR86_RS19260 0.70 -0.9
310,607 - ABZR86_RS19260 0.70 +0.0
310,607 - ABZR86_RS19260 0.70 -0.0
310,607 - ABZR86_RS19260 0.70 +0.7
310,607 - ABZR86_RS19260 0.70 -0.7
310,607 - ABZR86_RS19260 0.70 +0.0
310,612 + ABZR86_RS19260 0.70 +1.0
310,624 + ABZR86_RS19260 0.70 +0.1
310,625 - ABZR86_RS19260 0.70 -0.1
310,625 - ABZR86_RS19260 0.70 -0.1
310,636 + ABZR86_RS19260 0.71 +0.4
310,637 - ABZR86_RS19260 0.71 -1.0
310,637 - ABZR86_RS19260 0.71 -0.7
310,648 + ABZR86_RS19260 0.72 +0.3
310,648 + ABZR86_RS19260 0.72 +1.1
310,648 + ABZR86_RS19260 0.72 +0.9
310,648 + ABZR86_RS19260 0.72 +0.1
310,648 + ABZR86_RS19260 0.72 +0.8
310,649 - ABZR86_RS19260 0.72 +1.0
310,649 - ABZR86_RS19260 0.72 +0.7
310,649 - ABZR86_RS19260 0.72 -0.1
310,649 - ABZR86_RS19260 0.72 +0.1
310,649 - ABZR86_RS19260 0.72 -0.5
310,649 - ABZR86_RS19260 0.72 +0.8
310,649 - ABZR86_RS19260 0.72 +0.3
310,649 - ABZR86_RS19260 0.72 +1.0
310,649 - ABZR86_RS19260 0.72 +1.3
310,735 + ABZR86_RS19260 0.75 +0.1
311,083 - +0.2
311,182 + -0.5
311,182 + -0.2
311,183 - +0.7
311,183 - +0.0
311,183 - +0.2
311,183 - +0.6
311,217 + +0.3
311,240 - -0.9
311,272 + -1.7
311,273 - +1.7
311,273 - +0.3
311,273 - -0.0
311,273 - +0.1
311,273 - +1.0
311,273 - +1.0
311,436 + ABZR86_RS19265 0.14 -2.6
311,436 + ABZR86_RS19265 0.14 -3.2
311,437 - ABZR86_RS19265 0.15 +0.0
311,437 - ABZR86_RS19265 0.15 -1.3
311,472 + ABZR86_RS19265 0.33 -2.0
311,472 + ABZR86_RS19265 0.33 -2.9
311,473 - ABZR86_RS19265 0.33 -3.4
311,520 + ABZR86_RS19265 0.57 -1.5
311,520 + ABZR86_RS19265 0.57 -1.3
311,520 + ABZR86_RS19265 0.57 -4.0
311,520 + ABZR86_RS19265 0.57 -1.2
311,520 + ABZR86_RS19265 0.57 -2.2
311,520 + ABZR86_RS19265 0.57 -1.6
311,530 - ABZR86_RS19265 0.63 -2.2
311,530 - ABZR86_RS19265 0.63 -2.3
311,530 - ABZR86_RS19265 0.63 -1.0
311,530 - ABZR86_RS19265 0.63 -1.3
311,644 + -0.4
311,644 + -0.2
311,644 + -3.9
311,645 - -1.0
311,645 - -1.8
311,645 - -0.8
311,764 + -0.9
311,764 + -2.3
311,764 + +1.0
311,765 - -3.1
311,765 - -2.6
311,765 - -0.9
311,890 + ABZR86_RS19270 0.13 -2.6
311,890 + ABZR86_RS19270 0.13 -1.1
311,890 + ABZR86_RS19270 0.13 -4.0
311,890 + ABZR86_RS19270 0.13 -1.5
311,890 + ABZR86_RS19270 0.13 +0.3
311,890 + ABZR86_RS19270 0.13 -2.4
311,891 - ABZR86_RS19270 0.13 -3.3
311,953 + ABZR86_RS19270 0.16 +1.0
312,050 + ABZR86_RS19270 0.21 -2.0
312,050 + ABZR86_RS19270 0.21 -1.4
312,050 + ABZR86_RS19270 0.21 +0.0
312,051 - ABZR86_RS19270 0.21 -2.2
312,051 - ABZR86_RS19270 0.21 -2.0
312,051 - ABZR86_RS19270 0.21 -2.0
312,051 - ABZR86_RS19270 0.21 -2.9
312,085 + ABZR86_RS19270 0.23 -1.6
312,086 - ABZR86_RS19270 0.23 -1.1
312,265 + ABZR86_RS19270 0.31 -0.5
312,265 + ABZR86_RS19270 0.31 -1.3
312,503 - ABZR86_RS19270 0.43 +1.0

Or see this region's nucleotide sequence