Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10215

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS10205 and ABZR86_RS10210 are separated by 10 nucleotidesABZR86_RS10210 and ABZR86_RS10215 are separated by 9 nucleotidesABZR86_RS10215 and ABZR86_RS10220 overlap by 4 nucleotidesABZR86_RS10220 and ABZR86_RS10225 are separated by 65 nucleotides ABZR86_RS10205: ABZR86_RS10205 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 2,265,518 to 2,266,336 _RS10205 ABZR86_RS10210: ABZR86_RS10210 - ADP compounds hydrolase NudE, at 2,266,347 to 2,266,904 _RS10210 ABZR86_RS10215: ABZR86_RS10215 - inositol monophosphatase family protein, at 2,266,914 to 2,267,702 _RS10215 ABZR86_RS10220: ABZR86_RS10220 - type II secretion system protein N, at 2,267,699 to 2,268,478 _RS10220 ABZR86_RS10225: ABZR86_RS10225 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 2,268,544 to 2,269,911 _RS10225 Position (kb) 2266 2267 2268Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2265.945 kb on + strand, within ABZR86_RS10205at 2265.945 kb on + strand, within ABZR86_RS10205at 2265.945 kb on + strand, within ABZR86_RS10205at 2265.946 kb on - strand, within ABZR86_RS10205at 2266.254 kb on + strand, within ABZR86_RS10205at 2266.255 kb on - strandat 2266.255 kb on - strandat 2266.419 kb on + strand, within ABZR86_RS10210at 2266.419 kb on + strand, within ABZR86_RS10210at 2266.420 kb on - strand, within ABZR86_RS10210at 2266.544 kb on + strand, within ABZR86_RS10210at 2266.555 kb on + strand, within ABZR86_RS10210at 2266.799 kb on - strand, within ABZR86_RS10210at 2266.916 kb on - strandat 2266.916 kb on - strandat 2266.916 kb on - strandat 2266.923 kb on + strandat 2267.131 kb on + strand, within ABZR86_RS10215at 2267.132 kb on - strand, within ABZR86_RS10215at 2267.336 kb on - strand, within ABZR86_RS10215at 2267.500 kb on + strand, within ABZR86_RS10215at 2267.500 kb on + strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.501 kb on - strand, within ABZR86_RS10215at 2267.828 kb on - strand, within ABZR86_RS10220at 2267.841 kb on + strand, within ABZR86_RS10220at 2268.412 kb on - strandat 2268.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,265,945 + ABZR86_RS10205 0.52 -0.3
2,265,945 + ABZR86_RS10205 0.52 -0.8
2,265,945 + ABZR86_RS10205 0.52 -2.1
2,265,946 - ABZR86_RS10205 0.52 -2.0
2,266,254 + ABZR86_RS10205 0.90 -0.1
2,266,255 - -2.0
2,266,255 - -0.8
2,266,419 + ABZR86_RS10210 0.13 +0.8
2,266,419 + ABZR86_RS10210 0.13 +0.3
2,266,420 - ABZR86_RS10210 0.13 +0.5
2,266,544 + ABZR86_RS10210 0.35 +0.5
2,266,555 + ABZR86_RS10210 0.37 -0.1
2,266,799 - ABZR86_RS10210 0.81 -0.8
2,266,916 - -0.6
2,266,916 - -1.8
2,266,916 - -1.8
2,266,923 + -1.6
2,267,131 + ABZR86_RS10215 0.28 -2.3
2,267,132 - ABZR86_RS10215 0.28 -2.7
2,267,336 - ABZR86_RS10215 0.53 -2.8
2,267,500 + ABZR86_RS10215 0.74 -2.1
2,267,500 + ABZR86_RS10215 0.74 -3.2
2,267,501 - ABZR86_RS10215 0.74 -1.3
2,267,501 - ABZR86_RS10215 0.74 -4.6
2,267,501 - ABZR86_RS10215 0.74 -2.5
2,267,501 - ABZR86_RS10215 0.74 -3.0
2,267,828 - ABZR86_RS10220 0.17 -0.3
2,267,841 + ABZR86_RS10220 0.18 +0.2
2,268,412 - -0.5
2,268,412 - -0.2

Or see this region's nucleotide sequence