Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08580 and ABZR86_RS08585 are separated by 493 nucleotides ABZR86_RS08585 and ABZR86_RS08590 are separated by 19 nucleotides
ABZR86_RS08580: ABZR86_RS08580 - PAS-domain containing protein, at 1,919,554 to 1,922,853
_RS08580
ABZR86_RS08585: ABZR86_RS08585 - PHB depolymerase family esterase, at 1,923,347 to 1,924,378
_RS08585
ABZR86_RS08590: ABZR86_RS08590 - TonB-dependent receptor, at 1,924,398 to 1,926,608
_RS08590
Position (kb)
1923
1924
1925 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1922.373 kb on - strand, within ABZR86_RS08580 at 1922.373 kb on - strand, within ABZR86_RS08580 at 1922.373 kb on - strand, within ABZR86_RS08580 at 1922.468 kb on + strand, within ABZR86_RS08580 at 1922.469 kb on - strand, within ABZR86_RS08580 at 1922.570 kb on + strand at 1922.621 kb on + strand at 1922.621 kb on + strand at 1922.621 kb on + strand at 1922.621 kb on + strand at 1922.622 kb on - strand at 1922.622 kb on - strand at 1922.694 kb on - strand at 1922.735 kb on + strand at 1923.424 kb on - strand at 1923.424 kb on - strand at 1923.438 kb on + strand at 1923.501 kb on + strand, within ABZR86_RS08585 at 1923.501 kb on + strand, within ABZR86_RS08585 at 1923.520 kb on - strand, within ABZR86_RS08585 at 1923.520 kb on - strand, within ABZR86_RS08585 at 1923.651 kb on + strand, within ABZR86_RS08585 at 1923.652 kb on - strand, within ABZR86_RS08585 at 1923.652 kb on - strand, within ABZR86_RS08585 at 1923.652 kb on - strand, within ABZR86_RS08585 at 1923.657 kb on + strand, within ABZR86_RS08585 at 1923.657 kb on + strand, within ABZR86_RS08585 at 1923.657 kb on + strand, within ABZR86_RS08585 at 1923.657 kb on + strand, within ABZR86_RS08585 at 1923.657 kb on + strand, within ABZR86_RS08585 at 1923.658 kb on - strand, within ABZR86_RS08585 at 1923.658 kb on - strand, within ABZR86_RS08585 at 1923.658 kb on - strand, within ABZR86_RS08585 at 1923.658 kb on - strand, within ABZR86_RS08585 at 1923.658 kb on - strand, within ABZR86_RS08585 at 1923.658 kb on - strand, within ABZR86_RS08585 at 1923.699 kb on + strand, within ABZR86_RS08585 at 1923.700 kb on - strand, within ABZR86_RS08585 at 1923.766 kb on - strand, within ABZR86_RS08585 at 1923.817 kb on - strand, within ABZR86_RS08585 at 1923.897 kb on + strand, within ABZR86_RS08585 at 1923.898 kb on - strand, within ABZR86_RS08585 at 1924.011 kb on + strand, within ABZR86_RS08585 at 1924.011 kb on + strand, within ABZR86_RS08585 at 1924.012 kb on - strand, within ABZR86_RS08585 at 1924.209 kb on + strand, within ABZR86_RS08585 at 1924.236 kb on + strand, within ABZR86_RS08585 at 1924.236 kb on + strand, within ABZR86_RS08585 at 1924.237 kb on - strand, within ABZR86_RS08585 at 1924.378 kb on + strand at 1924.379 kb on - strand at 1924.444 kb on + strand at 1924.444 kb on + strand at 1924.445 kb on - strand at 1924.478 kb on + strand at 1924.478 kb on + strand at 1924.479 kb on - strand at 1924.479 kb on - strand at 1924.480 kb on + strand at 1924.506 kb on - strand at 1924.640 kb on - strand, within ABZR86_RS08590 at 1924.640 kb on - strand, within ABZR86_RS08590 at 1924.640 kb on - strand, within ABZR86_RS08590 at 1924.645 kb on + strand, within ABZR86_RS08590 at 1924.645 kb on + strand, within ABZR86_RS08590 at 1924.646 kb on - strand, within ABZR86_RS08590 at 1924.646 kb on - strand, within ABZR86_RS08590 at 1924.646 kb on - strand, within ABZR86_RS08590 at 1924.646 kb on - strand, within ABZR86_RS08590 at 1924.688 kb on - strand, within ABZR86_RS08590 at 1924.784 kb on - strand, within ABZR86_RS08590 at 1924.784 kb on - strand, within ABZR86_RS08590 at 1924.930 kb on + strand, within ABZR86_RS08590 at 1924.964 kb on - strand, within ABZR86_RS08590 at 1924.964 kb on - strand, within ABZR86_RS08590 at 1924.964 kb on - strand, within ABZR86_RS08590 at 1924.967 kb on + strand, within ABZR86_RS08590 at 1924.967 kb on + strand, within ABZR86_RS08590 at 1924.968 kb on - strand, within ABZR86_RS08590 at 1924.968 kb on - strand, within ABZR86_RS08590 at 1924.968 kb on - strand, within ABZR86_RS08590 at 1924.985 kb on + strand, within ABZR86_RS08590 at 1924.986 kb on - strand, within ABZR86_RS08590 at 1925.134 kb on + strand, within ABZR86_RS08590 at 1925.134 kb on + strand, within ABZR86_RS08590 at 1925.135 kb on - strand, within ABZR86_RS08590 at 1925.272 kb on + strand, within ABZR86_RS08590 at 1925.272 kb on + strand, within ABZR86_RS08590
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,922,373 - ABZR86_RS08580 0.85 -0.1 1,922,373 - ABZR86_RS08580 0.85 +0.6 1,922,373 - ABZR86_RS08580 0.85 -0.7 1,922,468 + ABZR86_RS08580 0.88 +0.7 1,922,469 - ABZR86_RS08580 0.88 +1.2 1,922,570 + -0.9 1,922,621 + -0.5 1,922,621 + -0.4 1,922,621 + +0.2 1,922,621 + +0.5 1,922,622 - +0.0 1,922,622 - +0.3 1,922,694 - +2.1 1,922,735 + +0.9 1,923,424 - +0.2 1,923,424 - +0.4 1,923,438 + +0.7 1,923,501 + ABZR86_RS08585 0.15 +0.0 1,923,501 + ABZR86_RS08585 0.15 +0.3 1,923,520 - ABZR86_RS08585 0.17 +0.4 1,923,520 - ABZR86_RS08585 0.17 +0.4 1,923,651 + ABZR86_RS08585 0.29 +0.6 1,923,652 - ABZR86_RS08585 0.30 +0.3 1,923,652 - ABZR86_RS08585 0.30 +0.1 1,923,652 - ABZR86_RS08585 0.30 -0.2 1,923,657 + ABZR86_RS08585 0.30 -0.8 1,923,657 + ABZR86_RS08585 0.30 +0.4 1,923,657 + ABZR86_RS08585 0.30 -0.4 1,923,657 + ABZR86_RS08585 0.30 -0.1 1,923,657 + ABZR86_RS08585 0.30 +1.1 1,923,658 - ABZR86_RS08585 0.30 -0.3 1,923,658 - ABZR86_RS08585 0.30 -0.7 1,923,658 - ABZR86_RS08585 0.30 -0.2 1,923,658 - ABZR86_RS08585 0.30 +0.0 1,923,658 - ABZR86_RS08585 0.30 -0.7 1,923,658 - ABZR86_RS08585 0.30 -0.2 1,923,699 + ABZR86_RS08585 0.34 +1.4 1,923,700 - ABZR86_RS08585 0.34 +0.4 1,923,766 - ABZR86_RS08585 0.41 +0.2 1,923,817 - ABZR86_RS08585 0.46 -0.6 1,923,897 + ABZR86_RS08585 0.53 +2.9 1,923,898 - ABZR86_RS08585 0.53 +1.0 1,924,011 + ABZR86_RS08585 0.64 +0.4 1,924,011 + ABZR86_RS08585 0.64 +0.4 1,924,012 - ABZR86_RS08585 0.64 +2.5 1,924,209 + ABZR86_RS08585 0.84 -0.7 1,924,236 + ABZR86_RS08585 0.86 -0.3 1,924,236 + ABZR86_RS08585 0.86 +0.2 1,924,237 - ABZR86_RS08585 0.86 +0.0 1,924,378 + +1.1 1,924,379 - +0.5 1,924,444 + +0.3 1,924,444 + +0.0 1,924,445 - -2.0 1,924,478 + -1.1 1,924,478 + -0.6 1,924,479 - +0.8 1,924,479 - -1.7 1,924,480 + -1.2 1,924,506 - -0.4 1,924,640 - ABZR86_RS08590 0.11 +0.3 1,924,640 - ABZR86_RS08590 0.11 +0.4 1,924,640 - ABZR86_RS08590 0.11 +0.2 1,924,645 + ABZR86_RS08590 0.11 +0.4 1,924,645 + ABZR86_RS08590 0.11 +0.4 1,924,646 - ABZR86_RS08590 0.11 +0.5 1,924,646 - ABZR86_RS08590 0.11 +0.2 1,924,646 - ABZR86_RS08590 0.11 +0.5 1,924,646 - ABZR86_RS08590 0.11 -0.2 1,924,688 - ABZR86_RS08590 0.13 -0.6 1,924,784 - ABZR86_RS08590 0.17 +0.9 1,924,784 - ABZR86_RS08590 0.17 -0.2 1,924,930 + ABZR86_RS08590 0.24 +0.6 1,924,964 - ABZR86_RS08590 0.26 -0.1 1,924,964 - ABZR86_RS08590 0.26 -0.3 1,924,964 - ABZR86_RS08590 0.26 +2.5 1,924,967 + ABZR86_RS08590 0.26 +0.7 1,924,967 + ABZR86_RS08590 0.26 +0.3 1,924,968 - ABZR86_RS08590 0.26 -0.1 1,924,968 - ABZR86_RS08590 0.26 -1.0 1,924,968 - ABZR86_RS08590 0.26 -1.0 1,924,985 + ABZR86_RS08590 0.27 -0.1 1,924,986 - ABZR86_RS08590 0.27 +0.9 1,925,134 + ABZR86_RS08590 0.33 -0.0 1,925,134 + ABZR86_RS08590 0.33 +1.4 1,925,135 - ABZR86_RS08590 0.33 +0.8 1,925,272 + ABZR86_RS08590 0.40 -1.9 1,925,272 + ABZR86_RS08590 0.40 +0.5
Or see this region's nucleotide sequence