Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08195 and ABZR86_RS08200 are separated by 12 nucleotides ABZR86_RS08200 and ABZR86_RS08205 are separated by 174 nucleotides ABZR86_RS08205 and ABZR86_RS08210 are separated by 122 nucleotides ABZR86_RS08210 and ABZR86_RS08215 are separated by 38 nucleotides
ABZR86_RS08195: ABZR86_RS08195 - SulP family inorganic anion transporter, at 1,825,228 to 1,826,745
_RS08195
ABZR86_RS08200: ABZR86_RS08200 - carbonic anhydrase, at 1,826,758 to 1,827,441
_RS08200
ABZR86_RS08205: ABZR86_RS08205 - hypothetical protein, at 1,827,616 to 1,827,930
_RS08205
ABZR86_RS08210: ABZR86_RS08210 - hypothetical protein, at 1,828,053 to 1,828,253
_RS08210
ABZR86_RS08215: ABZR86_RS08215 - porin, at 1,828,292 to 1,829,710
_RS08215
Position (kb)
1826
1827
1828 Strain fitness (log2 ratio)
-1
0
1
2 at 1825.913 kb on + strand, within ABZR86_RS08195 at 1825.914 kb on - strand, within ABZR86_RS08195 at 1825.914 kb on - strand, within ABZR86_RS08195 at 1825.914 kb on - strand, within ABZR86_RS08195 at 1826.732 kb on + strand at 1826.733 kb on - strand at 1826.733 kb on - strand at 1826.733 kb on - strand at 1826.894 kb on + strand, within ABZR86_RS08200 at 1826.894 kb on + strand, within ABZR86_RS08200 at 1826.894 kb on + strand, within ABZR86_RS08200 at 1826.894 kb on + strand, within ABZR86_RS08200 at 1826.895 kb on - strand, within ABZR86_RS08200 at 1826.895 kb on - strand, within ABZR86_RS08200 at 1826.895 kb on - strand, within ABZR86_RS08200 at 1827.050 kb on + strand, within ABZR86_RS08200 at 1827.051 kb on - strand, within ABZR86_RS08200 at 1827.246 kb on + strand, within ABZR86_RS08200 at 1827.246 kb on + strand, within ABZR86_RS08200 at 1827.247 kb on - strand, within ABZR86_RS08200 at 1827.447 kb on + strand at 1827.447 kb on + strand at 1827.968 kb on + strand at 1828.329 kb on + strand at 1828.329 kb on + strand at 1828.329 kb on + strand at 1828.379 kb on + strand at 1828.379 kb on + strand at 1828.379 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,825,913 + ABZR86_RS08195 0.45 -0.1 1,825,914 - ABZR86_RS08195 0.45 +0.8 1,825,914 - ABZR86_RS08195 0.45 -0.0 1,825,914 - ABZR86_RS08195 0.45 -0.0 1,826,732 + +2.4 1,826,733 - -0.5 1,826,733 - -0.5 1,826,733 - +2.4 1,826,894 + ABZR86_RS08200 0.20 +0.4 1,826,894 + ABZR86_RS08200 0.20 +1.4 1,826,894 + ABZR86_RS08200 0.20 +0.0 1,826,894 + ABZR86_RS08200 0.20 -0.3 1,826,895 - ABZR86_RS08200 0.20 -0.5 1,826,895 - ABZR86_RS08200 0.20 +0.5 1,826,895 - ABZR86_RS08200 0.20 +1.0 1,827,050 + ABZR86_RS08200 0.43 +0.2 1,827,051 - ABZR86_RS08200 0.43 +0.3 1,827,246 + ABZR86_RS08200 0.71 +1.0 1,827,246 + ABZR86_RS08200 0.71 +0.4 1,827,247 - ABZR86_RS08200 0.71 +0.1 1,827,447 + +1.6 1,827,447 + +0.3 1,827,968 + -1.0 1,828,329 + -0.2 1,828,329 + +0.1 1,828,329 + -0.9 1,828,379 + +0.1 1,828,379 + -1.2 1,828,379 + +0.5
Or see this region's nucleotide sequence