Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08200

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08195 and ABZR86_RS08200 are separated by 12 nucleotidesABZR86_RS08200 and ABZR86_RS08205 are separated by 174 nucleotidesABZR86_RS08205 and ABZR86_RS08210 are separated by 122 nucleotidesABZR86_RS08210 and ABZR86_RS08215 are separated by 38 nucleotides ABZR86_RS08195: ABZR86_RS08195 - SulP family inorganic anion transporter, at 1,825,228 to 1,826,745 _RS08195 ABZR86_RS08200: ABZR86_RS08200 - carbonic anhydrase, at 1,826,758 to 1,827,441 _RS08200 ABZR86_RS08205: ABZR86_RS08205 - hypothetical protein, at 1,827,616 to 1,827,930 _RS08205 ABZR86_RS08210: ABZR86_RS08210 - hypothetical protein, at 1,828,053 to 1,828,253 _RS08210 ABZR86_RS08215: ABZR86_RS08215 - porin, at 1,828,292 to 1,829,710 _RS08215 Position (kb) 1826 1827 1828Strain fitness (log2 ratio) -1 0 1 2at 1825.913 kb on + strand, within ABZR86_RS08195at 1825.914 kb on - strand, within ABZR86_RS08195at 1825.914 kb on - strand, within ABZR86_RS08195at 1825.914 kb on - strand, within ABZR86_RS08195at 1826.732 kb on + strandat 1826.733 kb on - strandat 1826.733 kb on - strandat 1826.733 kb on - strandat 1826.894 kb on + strand, within ABZR86_RS08200at 1826.894 kb on + strand, within ABZR86_RS08200at 1826.894 kb on + strand, within ABZR86_RS08200at 1826.894 kb on + strand, within ABZR86_RS08200at 1826.895 kb on - strand, within ABZR86_RS08200at 1826.895 kb on - strand, within ABZR86_RS08200at 1826.895 kb on - strand, within ABZR86_RS08200at 1827.050 kb on + strand, within ABZR86_RS08200at 1827.051 kb on - strand, within ABZR86_RS08200at 1827.246 kb on + strand, within ABZR86_RS08200at 1827.246 kb on + strand, within ABZR86_RS08200at 1827.247 kb on - strand, within ABZR86_RS08200at 1827.447 kb on + strandat 1827.447 kb on + strandat 1827.968 kb on + strandat 1828.329 kb on + strandat 1828.329 kb on + strandat 1828.329 kb on + strandat 1828.379 kb on + strandat 1828.379 kb on + strandat 1828.379 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,825,913 + ABZR86_RS08195 0.45 -0.1
1,825,914 - ABZR86_RS08195 0.45 +0.8
1,825,914 - ABZR86_RS08195 0.45 -0.0
1,825,914 - ABZR86_RS08195 0.45 -0.0
1,826,732 + +2.4
1,826,733 - -0.5
1,826,733 - -0.5
1,826,733 - +2.4
1,826,894 + ABZR86_RS08200 0.20 +0.4
1,826,894 + ABZR86_RS08200 0.20 +1.4
1,826,894 + ABZR86_RS08200 0.20 +0.0
1,826,894 + ABZR86_RS08200 0.20 -0.3
1,826,895 - ABZR86_RS08200 0.20 -0.5
1,826,895 - ABZR86_RS08200 0.20 +0.5
1,826,895 - ABZR86_RS08200 0.20 +1.0
1,827,050 + ABZR86_RS08200 0.43 +0.2
1,827,051 - ABZR86_RS08200 0.43 +0.3
1,827,246 + ABZR86_RS08200 0.71 +1.0
1,827,246 + ABZR86_RS08200 0.71 +0.4
1,827,247 - ABZR86_RS08200 0.71 +0.1
1,827,447 + +1.6
1,827,447 + +0.3
1,827,968 + -1.0
1,828,329 + -0.2
1,828,329 + +0.1
1,828,329 + -0.9
1,828,379 + +0.1
1,828,379 + -1.2
1,828,379 + +0.5

Or see this region's nucleotide sequence