Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS06700 and ABZR86_RS06705 are separated by 12 nucleotides ABZR86_RS06705 and ABZR86_RS06710 overlap by 7 nucleotides ABZR86_RS06710 and ABZR86_RS06715 overlap by 4 nucleotides ABZR86_RS06715 and ABZR86_RS06720 overlap by 1 nucleotides
ABZR86_RS06700: ABZR86_RS06700 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,476,125 to 1,476,754
_RS06700
ABZR86_RS06705: ABZR86_RS06705 - imidazole glycerol phosphate synthase subunit HisF, at 1,476,767 to 1,477,537
_RS06705
ABZR86_RS06710: ABZR86_RS06710 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,477,531 to 1,478,259
_RS06710
ABZR86_RS06715: ABZR86_RS06715 - imidazole glycerol phosphate synthase subunit HisH, at 1,478,256 to 1,478,846
_RS06715
ABZR86_RS06720: ABZR86_RS06720 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,478,846 to 1,479,910
_RS06720
Position (kb)
1477
1478
1479 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1476.644 kb on - strand, within ABZR86_RS06700 at 1476.645 kb on + strand, within ABZR86_RS06700 at 1476.645 kb on + strand, within ABZR86_RS06700 at 1476.646 kb on - strand, within ABZR86_RS06700 at 1476.801 kb on + strand at 1476.801 kb on + strand at 1476.802 kb on - strand at 1476.978 kb on + strand, within ABZR86_RS06705 at 1477.389 kb on + strand, within ABZR86_RS06705 at 1477.389 kb on + strand, within ABZR86_RS06705 at 1477.390 kb on - strand, within ABZR86_RS06705 at 1477.390 kb on - strand, within ABZR86_RS06705 at 1477.390 kb on - strand, within ABZR86_RS06705 at 1477.390 kb on - strand, within ABZR86_RS06705 at 1477.390 kb on - strand, within ABZR86_RS06705 at 1477.778 kb on + strand, within ABZR86_RS06710 at 1477.778 kb on + strand, within ABZR86_RS06710 at 1477.779 kb on - strand, within ABZR86_RS06710 at 1478.171 kb on + strand, within ABZR86_RS06710 at 1478.171 kb on + strand, within ABZR86_RS06710 at 1478.172 kb on - strand, within ABZR86_RS06710 at 1478.172 kb on - strand, within ABZR86_RS06710 at 1478.172 kb on - strand, within ABZR86_RS06710 at 1478.172 kb on - strand, within ABZR86_RS06710 at 1478.259 kb on + strand at 1478.259 kb on + strand at 1478.259 kb on + strand at 1478.259 kb on + strand at 1478.259 kb on + strand at 1478.260 kb on - strand at 1478.260 kb on - strand at 1478.260 kb on - strand at 1478.260 kb on - strand at 1478.260 kb on - strand at 1478.413 kb on + strand, within ABZR86_RS06715 at 1478.413 kb on + strand, within ABZR86_RS06715 at 1478.413 kb on + strand, within ABZR86_RS06715 at 1478.413 kb on + strand, within ABZR86_RS06715 at 1478.413 kb on + strand, within ABZR86_RS06715 at 1478.413 kb on + strand, within ABZR86_RS06715 at 1478.413 kb on + strand, within ABZR86_RS06715 at 1478.414 kb on - strand, within ABZR86_RS06715 at 1478.414 kb on - strand, within ABZR86_RS06715 at 1478.414 kb on - strand, within ABZR86_RS06715 at 1478.414 kb on - strand, within ABZR86_RS06715 at 1478.428 kb on + strand, within ABZR86_RS06715 at 1478.428 kb on + strand, within ABZR86_RS06715 at 1478.650 kb on - strand, within ABZR86_RS06715 at 1478.847 kb on + strand at 1478.847 kb on + strand at 1478.847 kb on + strand at 1478.847 kb on + strand at 1478.848 kb on - strand at 1478.848 kb on - strand at 1478.848 kb on - strand at 1478.848 kb on - strand at 1479.082 kb on - strand, within ABZR86_RS06720 at 1479.082 kb on - strand, within ABZR86_RS06720 at 1479.082 kb on - strand, within ABZR86_RS06720
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,476,644 - ABZR86_RS06700 0.82 -2.3 1,476,645 + ABZR86_RS06700 0.83 -2.0 1,476,645 + ABZR86_RS06700 0.83 -0.7 1,476,646 - ABZR86_RS06700 0.83 -1.5 1,476,801 + -2.8 1,476,801 + -4.5 1,476,802 - -0.5 1,476,978 + ABZR86_RS06705 0.27 -2.8 1,477,389 + ABZR86_RS06705 0.81 -1.1 1,477,389 + ABZR86_RS06705 0.81 -2.4 1,477,390 - ABZR86_RS06705 0.81 -3.6 1,477,390 - ABZR86_RS06705 0.81 -2.4 1,477,390 - ABZR86_RS06705 0.81 -3.8 1,477,390 - ABZR86_RS06705 0.81 -2.0 1,477,390 - ABZR86_RS06705 0.81 -1.7 1,477,778 + ABZR86_RS06710 0.34 -3.0 1,477,778 + ABZR86_RS06710 0.34 -0.3 1,477,779 - ABZR86_RS06710 0.34 -3.4 1,478,171 + ABZR86_RS06710 0.88 -0.6 1,478,171 + ABZR86_RS06710 0.88 -2.9 1,478,172 - ABZR86_RS06710 0.88 -2.7 1,478,172 - ABZR86_RS06710 0.88 -3.8 1,478,172 - ABZR86_RS06710 0.88 -1.7 1,478,172 - ABZR86_RS06710 0.88 -1.6 1,478,259 + -4.2 1,478,259 + -2.8 1,478,259 + -1.4 1,478,259 + -3.6 1,478,259 + -3.4 1,478,260 - -1.6 1,478,260 - -0.3 1,478,260 - +0.5 1,478,260 - -0.3 1,478,260 - +0.0 1,478,413 + ABZR86_RS06715 0.27 -1.9 1,478,413 + ABZR86_RS06715 0.27 -3.6 1,478,413 + ABZR86_RS06715 0.27 -4.5 1,478,413 + ABZR86_RS06715 0.27 -2.1 1,478,413 + ABZR86_RS06715 0.27 -4.0 1,478,413 + ABZR86_RS06715 0.27 -4.3 1,478,413 + ABZR86_RS06715 0.27 -0.4 1,478,414 - ABZR86_RS06715 0.27 -1.8 1,478,414 - ABZR86_RS06715 0.27 -1.4 1,478,414 - ABZR86_RS06715 0.27 -0.6 1,478,414 - ABZR86_RS06715 0.27 +0.2 1,478,428 + ABZR86_RS06715 0.29 -4.1 1,478,428 + ABZR86_RS06715 0.29 -2.3 1,478,650 - ABZR86_RS06715 0.67 -3.2 1,478,847 + -3.6 1,478,847 + -2.8 1,478,847 + -3.8 1,478,847 + -2.1 1,478,848 - -2.1 1,478,848 - -3.4 1,478,848 - -2.0 1,478,848 - -4.3 1,479,082 - ABZR86_RS06720 0.22 +0.7 1,479,082 - ABZR86_RS06720 0.22 -4.2 1,479,082 - ABZR86_RS06720 0.22 -5.0
Or see this region's nucleotide sequence