Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06700

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06695 and ABZR86_RS06700 are separated by 165 nucleotidesABZR86_RS06700 and ABZR86_RS06705 are separated by 12 nucleotidesABZR86_RS06705 and ABZR86_RS06710 overlap by 7 nucleotides ABZR86_RS06695: ABZR86_RS06695 - C13 family peptidase, at 1,474,925 to 1,475,959 _RS06695 ABZR86_RS06700: ABZR86_RS06700 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,476,125 to 1,476,754 _RS06700 ABZR86_RS06705: ABZR86_RS06705 - imidazole glycerol phosphate synthase subunit HisF, at 1,476,767 to 1,477,537 _RS06705 ABZR86_RS06710: ABZR86_RS06710 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,477,531 to 1,478,259 _RS06710 Position (kb) 1476 1477Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1475.159 kb on + strand, within ABZR86_RS06695at 1475.211 kb on + strand, within ABZR86_RS06695at 1475.212 kb on - strand, within ABZR86_RS06695at 1475.231 kb on + strand, within ABZR86_RS06695at 1475.231 kb on + strand, within ABZR86_RS06695at 1475.268 kb on + strand, within ABZR86_RS06695at 1475.269 kb on - strand, within ABZR86_RS06695at 1475.269 kb on - strand, within ABZR86_RS06695at 1475.289 kb on - strand, within ABZR86_RS06695at 1475.459 kb on + strand, within ABZR86_RS06695at 1475.460 kb on - strand, within ABZR86_RS06695at 1475.604 kb on - strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.711 kb on + strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1475.712 kb on - strand, within ABZR86_RS06695at 1476.071 kb on + strandat 1476.102 kb on + strandat 1476.123 kb on + strandat 1476.124 kb on - strandat 1476.172 kb on + strandat 1476.343 kb on - strand, within ABZR86_RS06700at 1476.343 kb on - strand, within ABZR86_RS06700at 1476.343 kb on - strand, within ABZR86_RS06700at 1476.644 kb on - strand, within ABZR86_RS06700at 1476.645 kb on + strand, within ABZR86_RS06700at 1476.645 kb on + strand, within ABZR86_RS06700at 1476.646 kb on - strand, within ABZR86_RS06700at 1476.801 kb on + strandat 1476.801 kb on + strandat 1476.802 kb on - strandat 1476.978 kb on + strand, within ABZR86_RS06705at 1477.389 kb on + strand, within ABZR86_RS06705at 1477.389 kb on + strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,475,159 + ABZR86_RS06695 0.23 -2.0
1,475,211 + ABZR86_RS06695 0.28 -0.2
1,475,212 - ABZR86_RS06695 0.28 +0.1
1,475,231 + ABZR86_RS06695 0.30 +0.2
1,475,231 + ABZR86_RS06695 0.30 +1.0
1,475,268 + ABZR86_RS06695 0.33 -0.8
1,475,269 - ABZR86_RS06695 0.33 +0.0
1,475,269 - ABZR86_RS06695 0.33 -0.8
1,475,289 - ABZR86_RS06695 0.35 +1.4
1,475,459 + ABZR86_RS06695 0.52 +0.0
1,475,460 - ABZR86_RS06695 0.52 -2.2
1,475,604 - ABZR86_RS06695 0.66 -0.5
1,475,711 + ABZR86_RS06695 0.76 +0.2
1,475,711 + ABZR86_RS06695 0.76 +0.7
1,475,711 + ABZR86_RS06695 0.76 -0.3
1,475,711 + ABZR86_RS06695 0.76 +0.2
1,475,712 - ABZR86_RS06695 0.76 +0.7
1,475,712 - ABZR86_RS06695 0.76 +0.2
1,475,712 - ABZR86_RS06695 0.76 +0.4
1,475,712 - ABZR86_RS06695 0.76 -0.4
1,475,712 - ABZR86_RS06695 0.76 -1.8
1,476,071 + -0.3
1,476,102 + +0.4
1,476,123 + -1.1
1,476,124 - -0.3
1,476,172 + -3.3
1,476,343 - ABZR86_RS06700 0.35 -4.8
1,476,343 - ABZR86_RS06700 0.35 +0.7
1,476,343 - ABZR86_RS06700 0.35 -3.8
1,476,644 - ABZR86_RS06700 0.82 -2.3
1,476,645 + ABZR86_RS06700 0.83 -2.0
1,476,645 + ABZR86_RS06700 0.83 -0.7
1,476,646 - ABZR86_RS06700 0.83 -1.5
1,476,801 + -2.8
1,476,801 + -4.5
1,476,802 - -0.5
1,476,978 + ABZR86_RS06705 0.27 -2.8
1,477,389 + ABZR86_RS06705 0.81 -1.1
1,477,389 + ABZR86_RS06705 0.81 -2.4
1,477,390 - ABZR86_RS06705 0.81 -3.6
1,477,390 - ABZR86_RS06705 0.81 -2.4
1,477,390 - ABZR86_RS06705 0.81 -3.8
1,477,390 - ABZR86_RS06705 0.81 -2.0
1,477,390 - ABZR86_RS06705 0.81 -1.7

Or see this region's nucleotide sequence