Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01525 and ABZR86_RS01530 overlap by 1 nucleotides ABZR86_RS01530 and ABZR86_RS01535 are separated by 187 nucleotides ABZR86_RS01535 and ABZR86_RS01540 are separated by 89 nucleotides
ABZR86_RS01525: ABZR86_RS01525 - ATP-binding protein, at 332,793 to 334,202
_RS01525
ABZR86_RS01530: ABZR86_RS01530 - response regulator transcription factor, at 334,202 to 334,867
_RS01530
ABZR86_RS01535: ABZR86_RS01535 - (2Fe-2S)-binding protein, at 335,055 to 335,606
_RS01535
ABZR86_RS01540: ABZR86_RS01540 - MipA/OmpV family protein, at 335,696 to 336,451
_RS01540
Position (kb) 334
335 Strain fitness (log2 ratio) -1
0
1 at 333.594 kb on - strand, within ABZR86_RS01525 at 334.104 kb on + strand at 334.188 kb on + strand at 334.287 kb on + strand, within ABZR86_RS01530 at 334.287 kb on + strand, within ABZR86_RS01530 at 334.287 kb on + strand, within ABZR86_RS01530 at 334.287 kb on + strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.288 kb on - strand, within ABZR86_RS01530 at 334.572 kb on + strand, within ABZR86_RS01530 at 334.656 kb on + strand, within ABZR86_RS01530 at 334.732 kb on - strand, within ABZR86_RS01530 at 334.732 kb on - strand, within ABZR86_RS01530 at 334.732 kb on - strand, within ABZR86_RS01530 at 334.858 kb on + strand at 334.859 kb on - strand at 334.912 kb on + strand at 334.912 kb on + strand at 334.913 kb on - strand at 334.913 kb on - strand at 334.937 kb on + strand at 334.937 kb on + strand at 334.942 kb on - strand at 335.318 kb on - strand, within ABZR86_RS01535 at 335.319 kb on + strand, within ABZR86_RS01535 at 335.319 kb on + strand, within ABZR86_RS01535 at 335.319 kb on + strand, within ABZR86_RS01535 at 335.320 kb on - strand, within ABZR86_RS01535 at 335.320 kb on - strand, within ABZR86_RS01535 at 335.656 kb on + strand at 335.656 kb on + strand at 335.657 kb on - strand at 335.657 kb on - strand at 335.657 kb on - strand at 335.657 kb on - strand at 335.657 kb on - strand at 335.657 kb on - strand at 335.657 kb on - strand at 335.843 kb on + strand, within ABZR86_RS01540
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 333,594 - ABZR86_RS01525 0.57 +0.7 334,104 + -0.3 334,188 + +0.7 334,287 + ABZR86_RS01530 0.13 +1.2 334,287 + ABZR86_RS01530 0.13 -0.4 334,287 + ABZR86_RS01530 0.13 -0.6 334,287 + ABZR86_RS01530 0.13 +0.3 334,288 - ABZR86_RS01530 0.13 +0.7 334,288 - ABZR86_RS01530 0.13 +0.5 334,288 - ABZR86_RS01530 0.13 -0.1 334,288 - ABZR86_RS01530 0.13 -0.2 334,572 + ABZR86_RS01530 0.56 -0.7 334,656 + ABZR86_RS01530 0.68 +0.2 334,732 - ABZR86_RS01530 0.80 -0.4 334,732 - ABZR86_RS01530 0.80 +0.4 334,732 - ABZR86_RS01530 0.80 +0.3 334,858 + +0.5 334,859 - +0.4 334,912 + +0.4 334,912 + +0.2 334,913 - +0.0 334,913 - -0.6 334,937 + +0.5 334,937 + +0.0 334,942 - -0.1 335,318 - ABZR86_RS01535 0.48 +0.2 335,319 + ABZR86_RS01535 0.48 +0.2 335,319 + ABZR86_RS01535 0.48 +0.4 335,319 + ABZR86_RS01535 0.48 +0.1 335,320 - ABZR86_RS01535 0.48 -0.2 335,320 - ABZR86_RS01535 0.48 +0.3 335,656 + -0.3 335,656 + -1.0 335,657 - -0.9 335,657 - +0.2 335,657 - +0.2 335,657 - +0.1 335,657 - -0.7 335,657 - +0.3 335,657 - -0.1 335,843 + ABZR86_RS01540 0.19 -0.7
Or see this region's nucleotide sequence